PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G007600.3
Common NameB456_002G007600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 411aa    MW: 46785.9 Da    PI: 7.9953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G007600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.11.8e-1964153299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +k ++ps+v+   +l lpk+f+ +h  +k e+++++lede+g++++vk+ ++k +    l++GW++F  a++L egD++vF+l++ s+f  
  Gorai.002G007600.3  64 IKYMLPSHVTGGFWLGLPKHFCLNHL-PK-EDRMMVLEDEEGKEFQVKYLVEKIG----LSGGWRGFSIAHKLLEGDVCVFHLVRPSKF-- 146
                         57899*****************9884.33.5679***************555555....************************998999.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v ++rk
  Gorai.002G007600.3 147 KVYIVRK 153
                         8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-2256155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2558157IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-2661152No hitNo description
PROSITE profilePS5086313.21163154IPR003340B3 DNA binding domain
SMARTSM010191.3E-2163154IPR003340B3 DNA binding domain
PfamPF023621.5E-1764153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAVSPKQRIS SLKIVSYEKE KAQCNKRKRA TYDEVYENGQ TKLAVMERAL DIQANLSSEF  60
PSMIKYMLPS HVTGGFWLGL PKHFCLNHLP KEDRMMVLED EEGKEFQVKY LVEKIGLSGG  120
WRGFSIAHKL LEGDVCVFHL VRPSKFKVYI VRKKCSDEVD VALGLLKLES STQLVDNGKE  180
LKICEISVGK TEDRNAPILY SSNIERTVDQ SKNNRVDLGS EVSDGVRLSD SIVNFREVKS  240
FEDFNILVNG LVIDSEFSKY LQMKYYELCC NQNSFLHENL LEGLNCKLVA GVIAETINIA  300
DAIRAAKLTT PHDSFLTWDK TLRSFEGLGM KVGFLRARLD KLMNLLTKSR RYKEVKLEQA  360
NSNEEKLKLE AKLAEVTHTL TKLDREIRLF KQEKADDLEA LFREVANGPW *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016715755.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X3
TrEMBLA0A0D2Q6460.0A0A0D2Q646_GOSRA; Uncharacterized protein
STRINGGorai.002G007600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-42B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]