PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G007600.2

Common Name

B456_002G007600, LOC105773209

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 437aa MW: 49748.5 Da PI: 9.2282

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G007600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61	2e-19	90	179	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +k ++ps+v+ +l lpk+f+ +h +k e+++++lede+g++++vk+ ++k + l++GW++F a++L egD++vF+l++ s+f Gorai.002G007600.2 90 IKYMLPSHVTGGFWLGLPKHFCLNHL-PK-EDRMMVLEDEEGKEFQVKYLVEKIG----LSGGWRGFSIAHKLLEGDVCVFHLVRPSKF-- 172 57899***************9884.33.5679***********555555....**********************998999.. PP EEEEE-S CS B3 93 vvkvfrk 99 +v ++rk Gorai.002G007600.2 173 KVYIVRK 179 8888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-22	82	181	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-25	84	183	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.96E-26	87	178	No hit	No description
PROSITE profile	PS50863	13.211	89	180	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-21	89	180	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-17	90	179	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MAVSPKQRIS SLKQVSRGRG RPPKTKLFRK KVPAMTVNQI VSYEKEKAQC NKRKRATYDE 60 VYENGQTKLA VMERALDIQA NLSSEFPSMI KYMLPSHVTG GFWLGLPKHF CLNHLPKEDR 120 MMVLEDEEGK EFQVKYLVEK IGLSGGWRGF SIAHKLLEGD VCVFHLVRPS KFKVYIVRKK 180 CSDEVDVALG LLKLESSTQL VDNGKELKIC EISVGKTEDR NAPILYSSNI ERTVDQSKNN 240 RVDLGSEVSD GVRLSDSIVN FREVKSFEDF NILVNGLVID SEFSKYLQMK YYELCCNQNS 300 FLHENLLEGL NCKLVAGVIA ETINIADAIR AAKLTTPHDS FLTWDKTLRS FEGLGMKVGF 360 LRARLDKLMN LLTKSRRYKE VKLEQANSNE EKLKLEAKLA EVTHTLTKLD REIRLFKQEK 420 ADDLEALFRE VANGPW*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MAVSPKQRIS SLKQVSRGRG RPPKTKLFRK KVPAMTVNQI VSYEKEKAQC NKRKRATYDE  60
VYENGQTKLA VMERALDIQA NLSSEFPSMI KYMLPSHVTG GFWLGLPKHF CLNHLPKEDR  120
MMVLEDEEGK EFQVKYLVEK IGLSGGWRGF SIAHKLLEGD VCVFHLVRPS KFKVYIVRKK  180
CSDEVDVALG LLKLESSTQL VDNGKELKIC EISVGKTEDR NAPILYSSNI ERTVDQSKNN  240
RVDLGSEVSD GVRLSDSIVN FREVKSFEDF NILVNGLVID SEFSKYLQMK YYELCCNQNS  300
FLHENLLEGL NCKLVAGVIA ETINIADAIR AAKLTTPHDS FLTWDKTLRS FEGLGMKVGF  360
LRARLDKLMN LLTKSRRYKE VKLEQANSNE EKLKLEAKLA EVTHTLTKLD REIRLFKQEK  420
ADDLEALFRE VANGPW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012450378.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A0D2M527	0.0	A0A0D2M527_GOSRA; Uncharacterized protein
STRING	Gorai.002G007600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-42	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G007600.2
Entrez Gene	105773209

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]