PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G007600.1
Common NameB456_002G007600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 444aa    MW: 50677.6 Da    PI: 8.7637
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G007600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.1e-1997186299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +k ++ps+v+   +l lpk+f+ +h  +k e+++++lede+g++++vk+ ++k +    l++GW++F  a++L egD++vF+l++ s+f  
  Gorai.002G007600.1  97 IKYMLPSHVTGGFWLGLPKHFCLNHL-PK-EDRMMVLEDEEGKEFQVKYLVEKIG----LSGGWRGFSIAHKLLEGDVCVFHLVRPSKF-- 179
                         57899*****************9884.33.5679***************555555....************************998999.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v ++rk
  Gorai.002G007600.1 180 KVYIVRK 186
                         8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-2289188IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2591190IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-2694185No hitNo description
SMARTSM010191.3E-2196187IPR003340B3 DNA binding domain
PROSITE profilePS5086313.21196187IPR003340B3 DNA binding domain
PfamPF023621.7E-1797186IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MFYVCMYVFS EVPKACKLSQ QVSRGRGRPP KTKLFRKKVP AMTVNQIVSY EKEKAQCNKR  60
KRATYDEVYE NGQTKLAVME RALDIQANLS SEFPSMIKYM LPSHVTGGFW LGLPKHFCLN  120
HLPKEDRMMV LEDEEGKEFQ VKYLVEKIGL SGGWRGFSIA HKLLEGDVCV FHLVRPSKFK  180
VYIVRKKCSD EVDVALGLLK LESSTQLVDN GKELKICEIS VGKTEDRNAP ILYSSNIERT  240
VDQSKNNRVD LGSEVSDGVR LSDSIVNFRE VKSFEDFNIL VNGLVIDSEF SKYLQMKYYE  300
LCCNQNSFLH ENLLEGLNCK LVAGVIAETI NIADAIRAAK LTTPHDSFLT WDKTLRSFEG  360
LGMKVGFLRA RLDKLMNLLT KSRRYKEVKL EQANSNEEKL KLEAKLAEVT HTLTKLDREI  420
RLFKQEKADD LEALFREVAN GPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450378.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A0D2PYT00.0A0A0D2PYT0_GOSRA; Uncharacterized protein
STRINGGorai.002G007600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16718911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-42B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]