PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G273300.2 | ||||||||
Common Name | B456_001G273300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 301aa MW: 31988.5 Da PI: 9.0283 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.8 | 4.7e-39 | 52 | 135 | 2 | 84 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasn 84 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ a+ s+s++++ Gorai.001G273300.2 52 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaAAGGSVSQQGA 135 789******************************************************************998544444444332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.1E-31 | 57 | 152 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 58 | 112 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDSKQSPKKV ANFLSLPQQQ QQPQNMGENK VGEVQDSQIV IADKEGKKQQ LAPKRSSNKD 60 RHTKVEGRGR RIRMPALCAA RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA 120 SALAAAGGSV SQQGASLSAG LHQRLEDLGG SSSSIGSGSG RTSWGIEGNL GRPHHVGTGL 180 WSPVSGYGFQ SLSGPSTTNL GTESSNYLQK LGFPGFDLPP TNMGQVSLTS ILGAANEQQL 240 PGLELGLSQE GHIGGLNPQA LSQFYQQMGQ ARVHQQEQYQ HQHQHQHQPP PKDDSQGSGQ 300 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ393217 | 1e-105 | GQ393217.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0182 SSR marker CGR5063 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012446136.1 | 0.0 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 5e-78 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0D2Q4X5 | 0.0 | A0A0D2Q4X5_GOSRA; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A0D2QWN6 | 0.0 | A0A0D2QWN6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G273300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 5e-68 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G273300.2 |