PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G268000.1
Common NameB456_001G268000, LOC105769337
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 226aa    MW: 26304.7 Da    PI: 6.1685
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G268000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.11e-131461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  Gorai.001G268000.1 14 RGPWTIEEDHKLMNFIFNNGIPCWRHVPKLAGLLRCGKSCRLRWINYL 61
                        89******************************99************97 PP

2Myb_DNA-binding56.28.1e-1867110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +T+ E++ +++++ qlG++ W++Ia++++ gRt++++k++w++
  Gorai.001G268000.1  67 RGCFTESEEDEIIRLHSQLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                         899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.761961IPR017930Myb domain
SuperFamilySSF466895.59E-2811108IPR009057Homeodomain-like
SMARTSM007178.3E-71363IPR001005SANT/Myb domain
PfamPF002491.1E-111461IPR001005SANT/Myb domain
CDDcd001678.04E-51661No hitNo description
PROSITE profilePS5129427.00862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2565117IPR009057Homeodomain-like
SMARTSM007171.5E-1666114IPR001005SANT/Myb domain
PfamPF002494.6E-1667110IPR001005SANT/Myb domain
CDDcd001671.76E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRKPCCDKV GLKRGPWTIE EDHKLMNFIF NNGIPCWRHV PKLAGLLRCG KSCRLRWINY  60
LRPDVKRGCF TESEEDEIIR LHSQLGNRWS KIASHFPGRT DNEIKNHWNT RIRKKLKLLG  120
LDPVTHKPIE NGEKNKQEET KSEDVRKDDE IQTTLDGTET DDLLNNYEIL CGSLDSSFSK  180
EESNNPSMAT QEEDCLKQWV DCVDSFFSWD NFTHLEEQIP FPPWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. Strongest expression in the stem. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445351.11e-167PREDICTED: myb-related protein 315-like
SwissprotP813941e-73MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A0D2QWG61e-165A0A0D2QWG6_GOSRA; Uncharacterized protein
STRINGGorai.001G268000.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-82myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]