PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.001G263200.1 | ||||||||
Common Name | B456_001G263200, LOC105768791 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 209aa MW: 24270.2 Da PI: 7.4474 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.1e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Gorai.001G263200.1 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.1e-17 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l+ ++++++G++ W++Ia++++ gRt++++k++w++ Gorai.001G263200.1 68 RGNITPEEQFLIMELHTKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 111 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.411 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.25E-30 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.09E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.882 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.96E-11 | 72 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MDKKPCKSQE VEVRKGPWTM EEDLILINYI ANHGEGVWNS LAKAAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQFLIM ELHTKWGNRW SKIAKHLPGR TDNEIKNYWR TRIQKHMNKP 120 AEVCYSNQSD CELLDQQASS SQLPTNTTNA DFMGTSYSPL SSFDYYNNIE AFSGQQQQQQ 180 IMLQSPSNQE DNYWNMEDIW SMQILNGN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 12 | 115 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JQ923474 | 0.0 | JQ923474.1 Gossypium hirsutum MYB24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444424.1 | 1e-157 | PREDICTED: myb-related protein 340 isoform X1 | ||||
Swissprot | P81391 | 1e-90 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A0D2Q4P3 | 1e-155 | A0A0D2Q4P3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G263200.1 | 1e-156 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G40350.1 | 3e-86 | myb domain protein 24 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.001G263200.1 |
Entrez Gene | 105768791 |
Publications ? help Back to Top | |||
---|---|---|---|
|