PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G256300.1
Common NameB456_001G256300, LOC105768135
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 252aa    MW: 28628.1 Da    PI: 7.6863
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G256300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97e-1866119457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         + +++ +q+++Le+ Fe  +++   ++ +LAk lgL+ rq+ +WFqNrRa++k+
  Gorai.001G256300.1  66 KKRLNMDQVKALEKSFELGNKLEPGRKLQLAKDLGLKPRQIAIWFQNRRARWKN 119
                         556899**********************************************95 PP
2HD-ZIP_I/II123.11.3e-3964154191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekk+rl+ +qvk+LE+sFe  +kLep rK +la++Lgl+prq+a+WFqnrRAR+k+kqlEkdy+aLk+ y++ k++n++L++++++L+ +l
  Gorai.001G256300.1  64 EKKKRLNMDQVKALEKSFELGNKLEPGRKLQLAKDLGLKPRQIAIWFQNRRARWKNKQLEKDYDALKKLYQTAKADNDALQAQNKKLTGQL 154
                         69*************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.04E-1849122IPR009057Homeodomain-like
PROSITE profilePS5007116.60160120IPR001356Homeobox domain
SMARTSM003892.6E-1763124IPR001356Homeobox domain
CDDcd000861.25E-1465121No hitNo description
PfamPF000462.9E-1565119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-1967128IPR009057Homeodomain-like
PRINTSPR000311.2E-591100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5100116IPR000047Helix-turn-helix motif
PfamPF021832.5E-10120160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAFPPHAFMF QTLHEDQNHF PSPYSLLPCP PQLFHGGVGK SHQEVHGHGD DDEFSDDDGS  60
HGGEKKKRLN MDQVKALEKS FELGNKLEPG RKLQLAKDLG LKPRQIAIWF QNRRARWKNK  120
QLEKDYDALK KLYQTAKADN DALQAQNKKL TGQLLSLKTK DSNETRIKNE NEGSWCSNGS  180
ENNYDMNLAI RPAATMTQLL HGSSKPSLHC LKLDQVVQQD QSLACHMFNQ DGYEQQGFWP  240
WADQSIKFPL N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKNKQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}.
UniprotTISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443346.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ004662e-71HAT7_ARATH; Homeobox-leucine zipper protein HAT7
SwissprotQ8LAT08e-72ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A0D2NEA30.0A0A0D2NEA3_GOSRA; Uncharacterized protein
STRINGGorai.001G256300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2469634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.14e-67homeobox 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]