PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G252700.1
Common NameB456_001G252700, LOC105771776
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 136aa    MW: 15318.2 Da    PI: 9.235
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G252700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-192171255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f t eeAa+a+++a+ +++g
  Gorai.001G252700.1 21 RYRGIRRRP-WGKFAAEIRDPTRNG--TRLWLGTFETVEEAARAYDRAAFAFRG 71
                        69*******.**********98887..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-132171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-312180IPR001471AP2/ERF domain
PROSITE profilePS5103224.9612179IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-232180IPR016177DNA-binding domain
CDDcd000181.19E-302180No hitNo description
SMARTSM003802.9E-372185IPR001471AP2/ERF domain
PRINTSPR003673.6E-112233IPR001471AP2/ERF domain
PRINTSPR003673.6E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEASQRGKRK MKNEMETGGV RYRGIRRRPW GKFAAEIRDP TRNGTRLWLG TFETVEEAAR  60
AYDRAAFAFR GQSAILNFPN EFQCQNPSFP ASSSCNSVGR VNPQRGGGSE VIEFEYLDNK  120
LLEDLLEAQQ NMHGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-322112114114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448626.13e-97PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D2NE208e-96A0A0D2NE20_GOSRA; Uncharacterized protein
STRINGGorai.001G252700.11e-96(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-33ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]