PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G250600.1

Common Name

B456_001G250600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 288aa MW: 31229.3 Da PI: 10.4228

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G250600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	7.1e-38	69	127	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 alkcprC+stntkfCy+nnysl+qPr++Ck+C+ryWt+GGalrnvPvGgg+r+nk+s+ Gorai.001G250600.1 69 VALKCPRCESTNTKFCYFNNYSLTQPRHLCKTCKRYWTRGGALRNVPVGGGCRRNKRSK 127 679*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-35	51	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-32	70	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MVFTSIPVSL DPPKGQQHSN HQAGPGNSAQ HFRPPPLLPP HGGGEGAGSI RPGSMADRAR 60 LVNIPVPEVA LKCPRCESTN TKFCYFNNYS LTQPRHLCKT CKRYWTRGGA LRNVPVGGGC 120 RRNKRSKGSV PKSPVRGDRQ TASGSSNTTI SSNIGPQVPP LRFMAPLHHH TEFGGRTDIG 180 LNNGSVPASS MTSLDQWRLQ QPPQFPFLGA SYQFESQGVE PSGCGVRPRI SSSMATLMAS 240 LKMEDNDQQK VRFSRPFLDV PGKDQYWGGT PWTDLSCFTS SSTKNPL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017619029.1	1e-170	PREDICTED: dof zinc finger protein DOF2.4-like
Refseq	XP_017648282.1	1e-170	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A0D2PWH4	0.0	A0A0D2PWH4_GOSRA; Uncharacterized protein
STRING	Gorai.001G250600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	4e-51	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Gorai.001G250600.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]