PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G243800.1
Common NameB456_001G243800, LOC105766783
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 568aa    MW: 61304.6 Da    PI: 6.7564
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G243800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.54e-10418475562
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                         kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +  l+++
  Gorai.001G243800.1 418 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 475
                         9********************************************9998877666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.8E-18414478IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.737416479IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.16E-11418469No hitNo description
Gene3DG3DSA:1.20.5.1709.2E-11418474No hitNo description
PfamPF001708.0E-9418472IPR004827Basic-leucine zipper domain
CDDcd147032.21E-24419468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MGDGEEGNTD VMQRIQSSFG TSSSSIPKQP LSMNHLEIPQ LNPNQIRGAA RHFSHFGQNF  60
NGGAAAGTGD GATNKRVGIP PSHPNQIPPI SPYSQIPMSR PSNQQMGSQS FNSGPTHSRS  120
LSQPSSFFSL DSLPPLSPSP FRDSSSMAVS DQVSTDVSMD ERDAAASHSL LPPSPFSKAN  180
SPRLGESLPP RKSHRRSSSD IPFGFNTIMQ FSPPLIPLRG SSKPAQLVKK ETSDGNGEGM  240
GERKSEGEVV DDLFSAYMNL DNMDALNPCD GKNNNGNENH EDLDSRASGT KTNGVDSSDN  300
EAESSVNESG NSSRGGMNST EKREGNKRAA GAGIAPSGRH YRSVSMDSFI GKLNFGDESP  360
KLPPSPGNRL GQLSPRNSID GNSAAFSLEF GNGEFTEAEL KKIMANEKLA EIAMTDPKRA  420
KRILANRQSA ARSKERKMRY ISELEHKVQT LQTEATTLSA QLTLLQRDSV GLTNQNNELK  480
FRLQAMEQQA QLRDALNEAL TAEVQRLKLA TQQLGGDSDP SKGMVSEPLS VNQQMFQLNI  540
SHQMQQQSPP QPQQQNGNTT AKTELNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441810.10.0PREDICTED: uncharacterized protein LOC105766783
RefseqXP_012441813.10.0PREDICTED: uncharacterized protein LOC105766783
TrEMBLA0A0D2PWA00.0A0A0D2PWA0_GOSRA; Uncharacterized protein
STRINGGorai.001G243800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42242757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-144bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]