PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G243700.3 | ||||||||
Common Name | B456_001G243700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 241aa MW: 26753.2 Da PI: 8.251 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 85.8 | 1.5e-26 | 35 | 195 | 16 | 184 |
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtk 106 ++++l +++++ms++aerda+i+ern+a+se+k+a+a+rd+a++qrdkalaer+ al+erdn+l+ l+ +e + ++ p+g+++ +g + Gorai.001G243700.3 35 QSNALV--MNKKIMSILAERDAAIQERNIAISERKEALAARDEALQQRDKALAERDSALIERDNALAVLQCRESA--KNFPFGSGIQRGRT 121 335555..99*************************************************************9887..78899****9*999 PP GAGA_bind 107 sidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 184 +++ + + + +d++ + +e++ ++alp+++ ++ + ++ +k+++ ++ +k +k kk e+ +++v++e a+ Gorai.001G243700.3 122 CMHPSYH---SSDTDETLN-HEMHVTNALPVSTIPSAEGKSCPVKRTKVNRAVSSKSPRKIKKVAEDLNRQVDTEFAP 195 9994433...333444444.79*************99999999998888888888889999**999999999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 1.2E-18 | 1 | 188 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 3.5E-13 | 1 | 240 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDGAGQLENG RYKLDRYKGA HPPWNMMPQH HVKEQSNALV MNKKIMSILA ERDAAIQERN 60 IAISERKEAL AARDEALQQR DKALAERDSA LIERDNALAV LQCRESAKNF PFGSGIQRGR 120 TCMHPSYHSS DTDETLNHEM HVTNALPVST IPSAEGKSCP VKRTKVNRAV SSKSPRKIKK 180 VAEDLNRQVD TEFAPAQEFP DIATSGEMVD GSHLVALPAY HHTHCHRCQT SGTPEWVGVR 240 * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441801.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4 isoform X4 | ||||
Swissprot | Q8S8C6 | 5e-54 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A0D2PW98 | 0.0 | A0A0D2PW98_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8KYJ5 | 1e-180 | A0A1U8KYJ5_GOSHI; protein BASIC PENTACYSTEINE4-like isoform X4 | ||||
STRING | Gorai.001G243700.1 | 1e-137 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 2e-56 | basic pentacysteine 4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G243700.3 |
Publications ? help Back to Top | |||
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