PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G241200.1 | ||||||||
Common Name | B456_001G241200, LOC105766486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 455aa MW: 49478.9 Da PI: 7.3512 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.7e-30 | 200 | 257 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK++kg e++rsYY+Ct+ +Cpvkkkvers+ d+ ++ei Y+g Hnhek Gorai.001G241200.1 200 EDGYNWRKYGQKPIKGCEYSRSYYKCTHLKCPVKKKVERST-DGLITEILYKGAHNHEK 257 8****************************************.***************85 PP | |||||||
2 | WRKY | 105.5 | 2.8e-33 | 373 | 431 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver++ dp++v++tYeg+Hnh+ Gorai.001G241200.1 373 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNEGCNVRKHVERASMDPRAVITTYEGKHNHD 431 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.114 | 194 | 258 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.7E-27 | 195 | 259 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-24 | 197 | 258 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-34 | 199 | 257 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-23 | 200 | 256 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-36 | 358 | 433 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-29 | 365 | 433 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.216 | 368 | 433 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-39 | 373 | 432 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-26 | 374 | 431 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MAEQGTSSKL SAPTRPTIAL PPTPAMDSLF SDGSGLSPGP MTLVSAFFSN QDSTENRPFS 60 QLLAGAMASP GYRLPYNSMD GSFMDVCFKD GGEKRSEPLN FGVPNSALFT VPPRLSPSGL 120 LNSPAFYCLS PQSPFGISHQ QALAQVTAQA AIAQSLNHEE TSSQMAPSAS GLQSSTMEYA 180 EASQFDGKNQ PSVAVDKPAE DGYNWRKYGQ KPIKGCEYSR SYYKCTHLKC PVKKKVERST 240 DGLITEILYK GAHNHEKPQP NKQGTGSSDG NANSQAPELG SLGLTGNLNK LNAVVPVCSI 300 PGKNHESTEA AELPGSSENE EHCDEEGRDE RDNNDEPNPK RRNAATEAAI AFSHKTVTEP 360 KIVVQTRSEV ELLDDGYRWR KYGQKVVKGN PHPRSYYKCT NEGCNVRKHV ERASMDPRAV 420 ITTYEGKHNH DVPTSRNSVH TQLTTICRSQ NHTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-38 | 200 | 433 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-38 | 200 | 433 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031098 | 0.0 | KF031098.1 Gossypium hirsutum WRKY transcription factor 59 (WRKY59) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441426.1 | 0.0 | PREDICTED: probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 1e-126 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A0D2M2I9 | 0.0 | A0A0D2M2I9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G241200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1534 | 27 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-116 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G241200.1 |
Entrez Gene | 105766486 |
Publications ? help Back to Top | |||
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