PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G239100.1 | ||||||||
Common Name | B456_001G239100, LOC105766244 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 116aa MW: 12466 Da PI: 9.2129 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.4 | 1.5e-32 | 45 | 101 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY eC+kNhAa +Gg+avDGC+Efm+s geegt+aal+CaACgCHRnFHRreve+e Gorai.001G239100.1 45 SVRYAECQKNHAAGVGGYAVDGCREFMAS-GEEGTTAALTCAACGCHRNFHRREVETE 101 79**************************9.999*********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-30 | 46 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-27 | 47 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.346 | 48 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-17 | 48 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MRLKGSPSLI RFGNRSTKMR KRQVVLRREE PPRSSSTNSS LTSRSVRYAE CQKNHAAGVG 60 GYAVDGCREF MASGEEGTTA ALTCAACGCH RNFHRREVET EVACDCSSPP PSNGA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems, flowers and siliques, and, to a lower extent, in inflorescence. {ECO:0000269|PubMed:16412086}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX588419 | 5e-61 | JX588419.1 Gossypium hirsutum clone NBRI_GE22842 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441077.1 | 8e-80 | PREDICTED: mini zinc finger protein 2 isoform X1 | ||||
Refseq | XP_016729700.1 | 8e-80 | PREDICTED: mini zinc finger protein 2-like isoform X1 | ||||
Swissprot | Q9LJW5 | 9e-44 | MIF2_ARATH; Mini zinc finger protein 2 | ||||
TrEMBL | A0A0D2M2F0 | 2e-78 | A0A0D2M2F0_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8MSA3 | 2e-78 | A0A1U8MSA3_GOSHI; mini zinc finger protein 2-like isoform X1 | ||||
STRING | Gorai.001G239100.1 | 3e-79 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM944 | 28 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 4e-24 | mini zinc finger 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G239100.1 |
Entrez Gene | 105766244 |
Publications ? help Back to Top | |||
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