PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G234900.1

Common Name

B456_001G234900, LOC105761054

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 562aa MW: 61042.2 Da PI: 6.2007

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G234900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.2	9.6e-16	352	398	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Gorai.001G234900.1 352 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 398 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.63E-21	346	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.044	348	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.00E-16	351	402	No hit	No description
Pfam	PF00010	3.4E-13	352	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.9E-21	352	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-17	354	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MNHCVPDFEM EDDYSIPSSS ILNRAKKPSM PEDGIMELLW QNGQVVMQSQ NQRSFKKPSP 60 FKYLDAGQSA LREIRSSSHH QQQQQQQQQQ QQSVTDHLFM QEDEMASWLH NPLSDANFDH 120 DFCADLLYPS SSTAVAPCVT STATTSAPPP PPLGRVPQVS ASAIVPASRP PIPPARRNEL 180 ESTRIQNFGS LSKHKTAARE EQPGPSNSKS VAREVTVVDS SDTPAAAPES GASQAMPWNT 240 EAASGEDNND ACANMSFAAV AYTQSAGVSV GASKDNIATC EATVTSSPGG SSASASAEPT 300 AQKTGPAEDR KRKGREPDDA ECHSEDAEFE SPETKKQSRG SSSTKRSRAA EVHNLSERRR 360 RDRINEKMRA LQELIPRCNK SDKASMLDEA IEYLKSLQLQ VQMMSMGCGM LPMMFPQHYM 420 PTMGMGIGMG MVMDMGLSRP MMPFHNVMAG SGLPTPAASA HLDPRFPVPA FHMSPQVPVP 480 DPSRIQPNNQ SDAMLNPLGM QNPNQPRIPS FADPYQQYMG LHQMQLHPPQ CQATAQPSSS 540 KPSTSKGAEN LENHPSGDMA R*

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MNHCVPDFEM EDDYSIPSSS ILNRAKKPSM PEDGIMELLW QNGQVVMQSQ NQRSFKKPSP  60
FKYLDAGQSA LREIRSSSHH QQQQQQQQQQ QQSVTDHLFM QEDEMASWLH NPLSDANFDH  120
DFCADLLYPS SSTAVAPCVT STATTSAPPP PPLGRVPQVS ASAIVPASRP PIPPARRNEL  180
ESTRIQNFGS LSKHKTAARE EQPGPSNSKS VAREVTVVDS SDTPAAAPES GASQAMPWNT  240
EAASGEDNND ACANMSFAAV AYTQSAGVSV GASKDNIATC EATVTSSPGG SSASASAEPT  300
AQKTGPAEDR KRKGREPDDA ECHSEDAEFE SPETKKQSRG SSSTKRSRAA EVHNLSERRR  360
RDRINEKMRA LQELIPRCNK SDKASMLDEA IEYLKSLQLQ VQMMSMGCGM LPMMFPQHYM  420
PTMGMGIGMG MVMDMGLSRP MMPFHNVMAG SGLPTPAASA HLDPRFPVPA FHMSPQVPVP  480
DPSRIQPNNQ SDAMLNPLGM QNPNQPRIPS FADPYQQYMG LHQMQLHPPQ CQATAQPSSS  540
KPSTSKGAEN LENHPSGDMA R*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	356	361	ERRRRD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.53	0.0	seedling

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48797306	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394260	1e-40	GQ394260.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1225 SSR marker CGR6819 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434175.1	0.0	PREDICTED: transcription factor PIF1-like
Refseq	XP_012434181.1	0.0	PREDICTED: transcription factor PIF1-like
Refseq	XP_012434189.1	0.0	PREDICTED: transcription factor PIF1-like
Refseq	XP_012434197.1	0.0	PREDICTED: transcription factor PIF1-like
TrEMBL	A0A0D2PVT8	0.0	A0A0D2PVT8_GOSRA; Uncharacterized protein
STRING	Gorai.001G234900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7108	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.3	7e-69	phytochrome interacting factor 3-like 5

Link Out ? help Back to Top
Phytozome	Gorai.001G234900.1
Entrez Gene	105761054

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]