PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G227800.3

Common Name

B456_001G227800, LOC105804132

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 183aa MW: 21065.1 Da PI: 10.1051

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G227800.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.7	3.5e-27	11	100	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+Y eYA+++GF vr+ + ++s +g++ r++ C+k+g++ ++k + +e+++r++ r gCka++ vk+ek+gkw+vt++e+eHnH+l+ Gorai.001G227800.3 11 KYYIEYARRIGFMVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKGTLGQEKKPRPSAREGCKATILVKMEKTGKWVVTRFEKEHNHPLM 100 69**************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-25	11	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MEFESEDDAK KYYIEYARRI GFMVRIMQRR RSGIDGRTLA RRLGCNKQGF SPNHKGTLGQ 60 EKKPRPSARE GCKATILVKM EKTGKWVVTR FEKEHNHPLM ITANGFNTTG DKDKKIEELT 120 MELAHQEQLC SAYREKLFAF INNVEKQTEE LSSKIEVIVD NVRKLEAERQ RFTHRSAGSL 180 GI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492077.1	1e-134	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_012492093.1	1e-134	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X3
Refseq	XP_012492099.1	1e-134	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X3
Swissprot	Q9SZL8	5e-20	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0D2M1U4	1e-133	A0A0D2M1U4_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2PVK0	1e-133	A0A0D2PVK0_GOSRA; Uncharacterized protein
STRING	Gorai.001G227800.1	1e-134	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	1e-71	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G227800.3
Entrez Gene	105804132

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]