PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G227800.1 | ||||||||
Common Name | B456_001G227800, LOC105804132 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 226aa MW: 25744.1 Da PI: 8.0847 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86 | 5.9e-27 | 54 | 143 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+Y eYA+++GF vr+ + ++s +g++ r++ C+k+g++ ++k + +e+++r++ r gCka++ vk+ek+gkw+vt++e+eHnH+l+ Gorai.001G227800.1 54 KYYIEYARRIGFMVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKGTLGQEKKPRPSAREGCKATILVKMEKTGKWVVTRFEKEHNHPLM 143 69**************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-25 | 54 | 143 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSLGSEETLH SWDLDKEGGK ADSSVEEKTA EREGSEILEP YVGMEFESED DAKKYYIEYA 60 RRIGFMVRIM QRRRSGIDGR TLARRLGCNK QGFSPNHKGT LGQEKKPRPS AREGCKATIL 120 VKMEKTGKWV VTRFEKEHNH PLMITANGFN TTGDKDKKIE ELTMELAHQE QLCSAYREKL 180 FAFINNVEKQ TEELSSKIEV IVDNVRKLEA ERQRFTHRSA GSLGI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492077.1 | 1e-167 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
TrEMBL | A0A0D2M1U4 | 1e-166 | A0A0D2M1U4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G227800.1 | 1e-167 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3918 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 5e-76 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G227800.1 |
Entrez Gene | 105804132 |
Publications ? help Back to Top | |||
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