PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G225500.1

Common Name

B456_001G225500, LOC105803878

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 656aa MW: 69779.8 Da PI: 4.2097

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G225500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.1	4.6e-29	105	159	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLH+ Fve+ ++LGG+++AtPk++l+lm+++gL l hvkSHLQkYRl Gorai.001G225500.1 105 KPRLRWTSELHSYFVEVCNRLGGPQRATPKAVLDLMDIDGLNLFHVKSHLQKYRL 159 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-25	103	159	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.02E-14	105	159	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-20	105	160	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MGEILSELNS VSVENNVVSQ NSDEFKVSVF GEQVLAGQGD HVNGHNQHDQ QLHQGGGNNN 60 TLLALQEIPG NLPPFTVSNG DPVFGNEVVE RVREKPKLIV TNDIKPRLRW TSELHSYFVE 120 VCNRLGGPQR ATPKAVLDLM DIDGLNLFHV KSHLQKYRLG KYADKDSTEG GQTGTFGSSS 180 SAIPLPSCTN QYNRRAKRNL KNTHGELYLK LQMSIQDMGA KKLEAEMHVQ RCLEEQRRYL 240 HTALESACKT LANQYLGDAA AVENAILYGQ ASAGLGNFAT IPVGPSGFGT SATTVPPFYS 300 EQQNAYPTYS NTLTTPANLG LQEQPVGCQL QTSFSPAPQG NISTSNGYFG SSPHQETLAA 360 AAAYTDWLVD EDLIQTSFSP APQGNTSTSN GYSGSSPHQE TSAAAAAVTD WLVDEDLIQT 420 SFSPAPQGNT TSNGYSGSSP HQETLAAAAA DMDWPVDEDL IQTSFSPASQ GNISTSNGYS 480 GSSPHQETSA AAAADTDWPV DEDLIQTSFS PSPKGNISTS NGYSGSSPHQ ETSAAAAADM 540 DWPVDEDLIQ TPFSPAPQGN ISTSNGYSGS SPHQETSAAA AADTDWPVDE DLIQTSFSPA 600 PKGNISTSNG YSASSPHQET SAAAAANIDW PVDEDLIQAF FNWDDNEPMN LDASL*

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MGEILSELNS VSVENNVVSQ NSDEFKVSVF GEQVLAGQGD HVNGHNQHDQ QLHQGGGNNN  60
TLLALQEIPG NLPPFTVSNG DPVFGNEVVE RVREKPKLIV TNDIKPRLRW TSELHSYFVE  120
VCNRLGGPQR ATPKAVLDLM DIDGLNLFHV KSHLQKYRLG KYADKDSTEG GQTGTFGSSS  180
SAIPLPSCTN QYNRRAKRNL KNTHGELYLK LQMSIQDMGA KKLEAEMHVQ RCLEEQRRYL  240
HTALESACKT LANQYLGDAA AVENAILYGQ ASAGLGNFAT IPVGPSGFGT SATTVPPFYS  300
EQQNAYPTYS NTLTTPANLG LQEQPVGCQL QTSFSPAPQG NISTSNGYFG SSPHQETLAA  360
AAAYTDWLVD EDLIQTSFSP APQGNTSTSN GYSGSSPHQE TSAAAAAVTD WLVDEDLIQT  420
SFSPAPQGNT TSNGYSGSSP HQETLAAAAA DMDWPVDEDL IQTSFSPASQ GNISTSNGYS  480
GSSPHQETSA AAAADTDWPV DEDLIQTSFS PSPKGNISTS NGYSGSSPHQ ETSAAAAADM  540
DWPVDEDLIQ TPFSPAPQGN ISTSNGYSGS SPHQETSAAA AADTDWPVDE DLIQTSFSPA  600
PKGNISTSNG YSASSPHQET SAAAAANIDW PVDEDLIQAF FNWDDNEPMN LDASL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-20	105	162	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-20	105	162	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-20	105	162	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	105	162	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	105	162	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	105	162	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-20	105	162	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-20	105	162	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-20	105	162	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-20	105	162	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-20	105	162	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-20	105	162	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012491750.1	0.0	PREDICTED: uncharacterized protein LOC105803878
TrEMBL	A0A0D2NCU6	0.0	A0A0D2NCU6_GOSRA; Uncharacterized protein
STRING	Gorai.001G225500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21949	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	2e-29	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G225500.1
Entrez Gene	105803878

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]