PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G210000.1 | ||||||||
Common Name | B456_001G210000, LOC105801826 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 115aa MW: 12397.6 Da PI: 7.5083 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.5 | 9.3e-11 | 1 | 21 | 36 | 56 |
G2-like 36 mkvkgLtlehvkSHLQkYRla 56 m+v+gLt+++vkSHLQkYRl+ Gorai.001G210000.1 1 MQVDGLTNDEVKSHLQKYRLH 21 9******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-9 | 1 | 24 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-8 | 1 | 21 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MQVDGLTNDE VKSHLQKYRL HTRRLLPTTT TTTLANQSGL VLGGGHAWMC QDQFGESSKG 60 SSSQSGSPQG PLQLATNTRG TSTTGCESIE DDEDAKSECY SWKSHVQKPR KNNA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964612 | 7e-54 | JX964612.1 Gossypium hirsutum clone NBRI_TRANS-881 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488587.1 | 2e-80 | PREDICTED: uncharacterized protein LOC105801826 | ||||
Refseq | XP_012488595.1 | 2e-80 | PREDICTED: uncharacterized protein LOC105801826 | ||||
Swissprot | Q9FX84 | 2e-17 | HHO6_ARATH; Transcription factor HHO6 | ||||
TrEMBL | A0A0D2Q1X1 | 4e-79 | A0A0D2Q1X1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G210000.1 | 6e-80 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20696 | 3 | 6 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G210000.1 |
Entrez Gene | 105801826 |
Publications ? help Back to Top | |||
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