PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G207600.1

Common Name

B456_001G207600, LOC105771448

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 418aa MW: 46777 Da PI: 8.1684

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G207600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	341.8	1.1e-104	35	416	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lLl+cA++ ss++l++a+++L ++s las +gd+mqRl a f+ ALa rl++ +++l k l+ ++ ++ +++ +a+ lf v+P+l Gorai.001G207600.1 35 LIQLLLTCAKHASSSNLHRADECLRQISLLASVSGDSMQRLSAWFASALAVRLVKRWPGLHKVLNYTQLPK--QDQLGQAQPLFGRVCPYL 123 689***************************************************************995..777788999***** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 fs+ + +++ +a+ ge+ +H +D++ + W++Ll+++++ +g+p+l++T +++ +k lee+g rL k Ae+lg+pf+f +l Gorai.001G207600.1 124 GFSYAIISRTLIKAMTGERVIHLVDLGSGDANLWIPLLRSFSCLLDGQPHLKVTCMNA----NKAILEELGPRLVKEAEALGLPFQFAPL- 209 ******************************************************....99*********************5. PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 +l +l+l++L vk+gEala ++l+lh+ll + + +++ ++L++++s sPk++ +ve+eadhn +++++rf+e Gorai.001G207600.1 210 NVSLRELTLDKLGVKSGEALAFISILNLHSLLaeddsvdahfshnkTNGIKDSKQMFRFLSTIRSSSPKLFFLVEKEADHNLNKLVDRFVE 300 889*********************************999976333444446778***************************** PP GRAS 260 aleyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348 l+yysa+fds++a+++ ++ +er ++E++ +g+ei+n+vaceg er+erhe++++W r+++aGFkpv + ++ +++ak +++ ++ +g Gorai.001G207600.1 301 GLHYYSAVFDSVDATFGGNTssRERLVLEEM-FGKEIENIVACEGVEREERHERYGRWMVRFGQAGFKPVMMWHDSTEDAKQMVEACGRNG 390 ********9999876657999999999.******************************************************* PP GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374 y++ +e++sl+++W+drpL++vSaW+ Gorai.001G207600.1 391 YKIVNERASLMICWHDRPLYAVSAWT 416 ***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.806	9	396	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-102	35	416	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MMRSSPKPEV TLSLALSPGS TLQEVVKPQE RGVRLIQLLL TCAKHASSSN LHRADECLRQ 60 ISLLASVSGD SMQRLSAWFA SALAVRLVKR WPGLHKVLNY TQLPKQDQLG QAQPLFGRVC 120 PYLGFSYAII SRTLIKAMTG ERVIHLVDLG SGDANLWIPL LRSFSCLLDG QPHLKVTCMN 180 ANKAILEELG PRLVKEAEAL GLPFQFAPLN VSLRELTLDK LGVKSGEALA FISILNLHSL 240 LAEDDSVDAH FSHNKTNGIK DSKQMFRFLS TIRSSSPKLF FLVEKEADHN LNKLVDRFVE 300 GLHYYSAVFD SVDATFGGNT SSRERLVLEE MFGKEIENIV ACEGVEREER HERYGRWMVR 360 FGQAGFKPVM MWHDSTEDAK QMVEACGRNG YKIVNERASL MICWHDRPLY AVSAWTC*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MMRSSPKPEV TLSLALSPGS TLQEVVKPQE RGVRLIQLLL TCAKHASSSN LHRADECLRQ  60
ISLLASVSGD SMQRLSAWFA SALAVRLVKR WPGLHKVLNY TQLPKQDQLG QAQPLFGRVC  120
PYLGFSYAII SRTLIKAMTG ERVIHLVDLG SGDANLWIPL LRSFSCLLDG QPHLKVTCMN  180
ANKAILEELG PRLVKEAEAL GLPFQFAPLN VSLRELTLDK LGVKSGEALA FISILNLHSL  240
LAEDDSVDAH FSHNKTNGIK DSKQMFRFLS TIRSSSPKLF FLVEKEADHN LNKLVDRFVE  300
GLHYYSAVFD SVDATFGGNT SSRERLVLEE MFGKEIENIV ACEGVEREER HERYGRWMVR  360
FGQAGFKPVM MWHDSTEDAK QMVEACGRNG YKIVNERASL MICWHDRPLY AVSAWTC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-47	27	416	11	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448371.1	0.0	PREDICTED: scarecrow-like protein 3
TrEMBL	A0A0D2M188	0.0	A0A0D2M188_GOSRA; Uncharacterized protein
STRING	Gorai.001G207600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20661	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-104	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Gorai.001G207600.1
Entrez Gene	105771448

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]