PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G206600.1

Common Name

B456_001G206600, LOC105771440

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 285aa MW: 31998.6 Da PI: 9.3582

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G206600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.4	3.8e-29	197	251	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+ W+p+LH+rFve ++ LGG +AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ Gorai.001G206600.1 197 NRRSWSPQLHARFVETLHILGGMYEATPKQIREMMNVDGLTNDQVKSHLQKYRLH 251 799**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.529	193	253	IPR017930	Myb domain
SuperFamily	SSF46689	4.66E-17	194	254	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-25	195	254	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-23	196	251	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-7	198	249	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MASSSNSLGL KLSLKPTYVP KTITDLMKDL LNIENETDKL AVLSDYISQH EEELNSIAAL 60 RGQLPQCMLL LMEALGTLRQ EFLKIKNGMV AGKEGDNIDM VLKENSGMKR KRCEKMLEAE 120 QVPNLKCDFK GKGVMMNSSP PHHPSNHKHP KAFRDFVQAP NQNPNSNGGG GLNLRADNRT 180 LLNYKHKPLT QPIWKNNRRS WSPQLHARFV ETLHILGGMY EATPKQIREM MNVDGLTNDQ 240 VKSHLQKYRL HSRKQQEGCA QQVAKGEDPW DPDRDGGEPM APAN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622450	3e-52	JX622450.1 Gossypium hirsutum clone NBRI_GE69182 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448367.1	0.0	PREDICTED: uncharacterized protein LOC105771440
TrEMBL	A0A0D2NC93	0.0	A0A0D2NC93_GOSRA; Uncharacterized protein
STRING	Gorai.001G206600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15410	7	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-23	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G206600.1
Entrez Gene	105771440

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]