PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G200400.1
Common NameB456_001G200400, LOC105800782
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 399aa    MW: 43633.3 Da    PI: 9.3687
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G200400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP147.78e-46992562133
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec..eaesssss 81 
                         a+kkdrhski+T++g RdRRvRls+e+a++fFdLqd+LGfdk+skt+eWLl++++ ai el++          + +  s++   +++ +  
  Gorai.001G200400.1  99 AVKKDRHSKICTAQGVRDRRVRLSIEIAREFFDLQDMLGFDKASKTVEWLLRKSNNAIRELVKMkrygngcpgG-QR-SFSlvPDDQYEMV 187
                         89**************************************************************6666555421.11.2222322232322 PP

                 TCP  82 asnsssg........................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                               +                        +   s+ k+ k  ++aa +  lakesrakarararertrekm+  
  Gorai.001G200400.1 188 ------AengalgvdggefegtafqsnllelEGVVSKDKKMKILHKAA-VPLLAKESRAKARARARERTREKMCSG 256
                         ......033334577777888889999999855556655555555555.799**********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-43100254IPR005333Transcription factor, TCP
PROSITE profilePS5136935.588101159IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.483235252IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MFFSTSANDY NNINPFLHFP SSSYHPQALP PPPPPPLLSH ESNDILLNHH HHHHDLVSAS  60
SLLPANPQLT DTLLNMALLN KDGVGFGGPP GFGFPVNKAV KKDRHSKICT AQGVRDRRVR  120
LSIEIAREFF DLQDMLGFDK ASKTVEWLLR KSNNAIRELV KMKRYGNGCP GGQRSFSLVP  180
DDQYEMVAEN GALGVDGGEF EGTAFQSNLL ELEGVVSKDK KMKILHKAAV PLLAKESRAK  240
ARARARERTR EKMCSGSGSS TSRHEWKICP DSSPHFLRSL SQLEPTKKSD HSYGHNSSSM  300
ASSSKVVAHQ VEEPSAASRD NVIEESLVIR RMLKPSAILG FQQNLATSKD ASCNSSGNNG  360
FPNLSQKWDI NGAMAHSTLC AVTTNVNLST GVQLYGKP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487556.10.0PREDICTED: transcription factor CYCLOIDEA
TrEMBLA0A0D2PUC10.0A0A0D2PUC1_GOSRA; Uncharacterized protein
STRINGGorai.001G200400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.29e-30TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]