PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G198600.1
Common NameB456_001G198600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 214aa    MW: 22921.6 Da    PI: 4.1367
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G198600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000285879223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        +C  C+k F+++     H+++H
  Gorai.001G198600.1 58 TCYVCSKNFTSWKAVFGHLKSH 79
                        6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7645784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSIDDADETG IDDPKGQGSS SIKRGSTTDV AIQIGPGSGS GSNARKKREM EIPRGEPTCY  60
VCSKNFTSWK AVFGHLKSHQ RETPGALPPP TFTPTEGSPE NNNDDETNPR EQLAPTLLNL  120
ALETMQKMSE DSNMSVVVAG EEASSSGKGR GRGKGRGRGR GRRCLDIDLN QPKTSFLLDL  180
NEPPPPEQDD DDEDDDDDDD DGAAADDDED DKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151160RGKGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487225.11e-154PREDICTED: uncharacterized protein LOC105800568
TrEMBLA0A0D2QT351e-152A0A0D2QT35_GOSRA; Uncharacterized protein
STRINGGorai.001G198600.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.12e-13C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]