PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G197500.3 | ||||||||
Common Name | B456_001G197500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 320aa MW: 35290.5 Da PI: 5.4262 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 1e-12 | 37 | 75 | 2 | 44 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 r +h+e E+rRR++iN++f++Lr+++P++ ++K +Ka+ L Gorai.001G197500.3 37 RSKHSETEQRRRSKINERFQTLRDIIPQN----DQKRDKASFL 75 899*************************9....8999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.9E-15 | 32 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-12 | 33 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.427 | 35 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.66E-10 | 35 | 75 | No hit | No description |
Pfam | PF00010 | 2.2E-10 | 37 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.008 | 41 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MVKSVASAQL HQEEEDDDGE TVKVEGKGSE QKANSNRSKH SETEQRRRSK INERFQTLRD 60 IIPQNDQKRD KASFLLEEKL QIYEGSYQGW SQEATKLIPW RNHRGLAESF IDHSQIMNNG 120 SNCENDGVIP SMVANAQNSI DSDLGDAAVF KTPDHPPVSA TSTVSMQTQS NTIATHGRGS 180 ITFHESASDS ENMVHQPQFQ SWQSRDCLSE SAVVNNSAIA REDLTIRDES VDLSSAYSQG 240 IRNSLTQVLQ SSGVDISQAS ISVKIDVGKR VAAGMTSTPS SSKEKDIQYT SNQEMAQTGV 300 RSYTEESDQA YKRHRTGKS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486994.1 | 0.0 | PREDICTED: transcription factor BIM3-like | ||||
TrEMBL | A0A0D2QSQ1 | 0.0 | A0A0D2QSQ1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G197500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 6e-52 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G197500.3 |
Publications ? help Back to Top | |||
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