PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G197300.1 | ||||||||
Common Name | B456_001G197300, LOC105800379 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 114aa MW: 12470.5 Da PI: 6.0625 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 38.5 | 2.5e-12 | 43 | 78 | 18 | 52 |
G2-like 18 veqLGG.sekAtPktilelmkvkgLtlehvkSHLQk 52 v+ +G s +AtPk+i+elm+v+gLt+++vkSH + Gorai.001G197300.1 43 VSIMGPqSSVATPKQIRELMQVDGLTNDEVKSHSFM 78 5555431358***********************655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-8 | 43 | 77 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.3E-9 | 51 | 76 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MATSDECCSV QLIDGDGSFN GTGIESFIKE VKLHECGLSY TVVSIMGPQS SVATPKQIRE 60 LMQVDGLTND EVKSHSFMSR CLVSVHYFGL KLLVVGICQW KQPCFCSCIP FFH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486935.1 | 3e-79 | PREDICTED: uncharacterized protein LOC105800379 | ||||
TrEMBL | A0A0D2PU44 | 6e-78 | A0A0D2PU44_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G197300.1 | 1e-78 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17996 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 7e-11 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G197300.1 |
Entrez Gene | 105800379 |
Publications ? help Back to Top | |||
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