PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G195600.6 | ||||||||
Common Name | B456_001G195600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 245aa MW: 26769.1 Da PI: 7.9007 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.4 | 1e-12 | 48 | 73 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++f+rtG C yG++C+F+H+ Gorai.001G195600.6 48 PGEPDCSYFLRTGSCGYGSNCRFNHP 73 5789*********************9 PP | |||||||
2 | zf-CCCH | 37.8 | 3.1e-12 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ Gorai.001G195600.6 92 QPDCGYFLKTGTCKYGSTCKYHHPK 116 789********************96 PP | |||||||
3 | zf-CCCH | 39.1 | 1.3e-12 | 139 | 161 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ Gorai.001G195600.6 139 SCPYYMRTGSCKFGVACKFHHPQ 161 6********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.042 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5E-7 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-10 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-6 | 53 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.521 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-6 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-10 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 94 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 95 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-7 | 133 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.108 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 136 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-10 | 138 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 139 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MPDNRQVQNN AVSNETADKI EEAIMRLKIN DNNQEVGVSR SASYPDRPGE PDCSYFLRTG 60 SCGYGSNCRF NHPVYDAQNG QYREELPERI GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG 120 AGPVTFNDLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QPASPGAGLP ANAVGSSILP 180 PSGVPYVGGL PSWSLPRPPH VSGPRVQTQS YMPVVVSPSQ NTIPAHGWST YMVSEFFLCS 240 VMPI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX580562 | 7e-59 | JX580562.1 Gossypium hirsutum clone NBRI_GE13012 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486550.1 | 1e-172 | PREDICTED: zinc finger CCCH domain-containing protein 3-like | ||||
Swissprot | Q94AD9 | 1e-84 | C3H3_ARATH; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A0D2NBN2 | 0.0 | A0A0D2NBN2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G195600.1 | 1e-172 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 4e-87 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G195600.6 |
Publications ? help Back to Top | |||
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