PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G195600.5
Common NameB456_001G195600, LOC105800152
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 306aa    MW: 32936 Da    PI: 8.452
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G195600.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.7e-12729527
                        --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                         C++++rtG Ck+G  CkF+H++
  Gorai.001G195600.5  7 SCPYYMRTGSCKFGVACKFHHPQ 29
                        6********************97 PP
2zf-CCCH38.32.2e-12147172227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ Cr+++ tGtCkyG+ Ck++H++
  Gorai.001G195600.5 147 DQPKCRYYMNTGTCKYGSDCKYHHPK 172
                         6789********************96 PP
3zf-CCCH33.57.3e-11192217126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +++++C+ +a +G CkyG++C+F H+
  Gorai.001G195600.5 192 PGQAICSSYAMYGLCKYGPTCRFDHP 217
                         5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.108230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6430IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4429IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10629IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-5728IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.314145173IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5145172IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-10147172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-7148173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-6151172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338191219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6191217IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6191218IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7193217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4196216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRQEEKSCPY YMRTGSCKFG VACKFHHPQP ASPGAGLPAN AVGSSILPPS GVPYVGGLPS  60
WSLPRPPHVS GPRVQTQSYM PVVVSPSQNT IPAHGWSTYM GNMSPVSSAG ILGSNFAYNL  120
MNPAESGSSE QMLLSSTSAS DFPERPDQPK CRYYMNTGTC KYGSDCKYHH PKERIANSAV  180
NSIGPLGLPS RPGQAICSSY AMYGLCKYGP TCRFDHPYMG YPYNYGLSVP LSVLDTSLLP  240
YQRMSPTAHL SEAPLPSKLS DLARNTDSLS KKHQNSEIKN SDDPPPQQVT SPHSLQGSSK  300
TSHDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486550.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
TrEMBLA0A0D2NBM80.0A0A0D2NBM8_GOSRA; Uncharacterized protein
TrEMBLA0A0D2Q1920.0A0A0D2Q192_GOSRA; Uncharacterized protein
TrEMBLA0A0D2QSV00.0A0A0D2QSV0_GOSRA; Uncharacterized protein
STRINGGorai.001G195600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-64C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]