PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G195600.2
Common NameB456_001G195600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 437aa    MW: 47544.1 Da    PI: 8.047
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G195600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42.1e-124772126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ++++ C++f+rtG C yG++C+F+H+
  Gorai.001G195600.2 47 PGEPDCSYFLRTGSCGYGSNCRFNHP 72
                        5789*********************9 PP
2zf-CCCH36.86.5e-1291115327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C +f++tGtCkyG++Ck++H++
  Gorai.001G195600.2  91 QPDCGYFLKTGTCKYGSTCKYHHPK 115
                         789********************96 PP
3zf-CCCH38.12.7e-12138160527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          C++++rtG Ck+G  CkF+H++
  Gorai.001G195600.2 138 SCPYYMRTGSCKFGVACKFHHPQ 160
                         6********************97 PP
4zf-CCCH37.73.5e-12278303227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ Cr+++ tGtCkyG+ Ck++H++
  Gorai.001G195600.2 278 DQPKCRYYMNTGTCKYGSDCKYHHPK 303
                         6789********************96 PP
5zf-CCCH32.81.1e-10323348126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +++++C+ +a +G CkyG++C+F H+
  Gorai.001G195600.2 323 PGQAICSSYAMYGLCKYGPTCRFDHP 348
                         5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0424674IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-74673IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-104872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-65175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-55272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.52188116IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-688115IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-693116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-494114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6132161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108133161IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4135160IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10137160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5138159IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.314276304IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-7279304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6282303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6322348IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6322349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338322350IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7324348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4327347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MPDNRQVQNN AVSNETADKI EAIMRLKIND NNQEVGVSRS ASYPDRPGEP DCSYFLRTGS  60
CGYGSNCRFN HPVYDAQNGQ YREELPERIG QPDCGYFLKT GTCKYGSTCK YHHPKDRNGA  120
GPVTFNDLGL PMRQEEKSCP YYMRTGSCKF GVACKFHHPQ PASPGAGLPA NAVGSSILPP  180
SGVPYVGGLP SWSLPRPPHV SGPRVQTQSY MPVVVSPSQN TIPAHGWSTY MGNMSPVSSA  240
GILGSNFAYN LMNPAESGSS EQMLLSSTSA SDFPERPDQP KCRYYMNTGT CKYGSDCKYH  300
HPKERIANSA VNSIGPLGLP SRPGQAICSS YAMYGLCKYG PTCRFDHPYM GYPYNYGLSV  360
PLSVLDTSLL PYQRMSPTAH LSEAPLPSKL SDLARNTDSL SKKHQNSEIK NSDDPPPQQV  420
TSPHSLQGSS KTSHDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5805621e-58JX580562.1 Gossypium hirsutum clone NBRI_GE13012 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486550.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
TrEMBLA0A0D2Q1920.0A0A0D2Q192_GOSRA; Uncharacterized protein
STRINGGorai.001G195600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-127C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]