PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G195600.1
Common NameB456_001G195600, LOC105800152
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 438aa    MW: 47673.2 Da    PI: 7.9231
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G195600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42.1e-124873126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ++++ C++f+rtG C yG++C+F+H+
  Gorai.001G195600.1 48 PGEPDCSYFLRTGSCGYGSNCRFNHP 73
                        5789*********************9 PP
2zf-CCCH36.86.5e-1292116327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C +f++tGtCkyG++Ck++H++
  Gorai.001G195600.1  92 QPDCGYFLKTGTCKYGSTCKYHHPK 116
                         789********************96 PP
3zf-CCCH382.7e-12139161527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          C++++rtG Ck+G  CkF+H++
  Gorai.001G195600.1 139 SCPYYMRTGSCKFGVACKFHHPQ 161
                         6********************97 PP
4zf-CCCH37.73.5e-12279304227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ Cr+++ tGtCkyG+ Ck++H++
  Gorai.001G195600.1 279 DQPKCRYYMNTGTCKYGSDCKYHHPK 304
                         6789********************96 PP
5zf-CCCH32.81.1e-10324349126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +++++C+ +a +G CkyG++C+F H+
  Gorai.001G195600.1 324 PGQAICSSYAMYGLCKYGPTCRFDHP 349
                         5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.5E-74774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0424775IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-104973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-55373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.52189117IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-689116IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-694117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-495115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108134162IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4136161IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5139160IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.314277305IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9279304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-7280305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6283304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338323351IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6323350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6323349IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7325349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4328348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MPDNRQVQNN AVSNETADKI EEAIMRLKIN DNNQEVGVSR SASYPDRPGE PDCSYFLRTG  60
SCGYGSNCRF NHPVYDAQNG QYREELPERI GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG  120
AGPVTFNDLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QPASPGAGLP ANAVGSSILP  180
PSGVPYVGGL PSWSLPRPPH VSGPRVQTQS YMPVVVSPSQ NTIPAHGWST YMGNMSPVSS  240
AGILGSNFAY NLMNPAESGS SEQMLLSSTS ASDFPERPDQ PKCRYYMNTG TCKYGSDCKY  300
HHPKERIANS AVNSIGPLGL PSRPGQAICS SYAMYGLCKY GPTCRFDHPY MGYPYNYGLS  360
VPLSVLDTSL LPYQRMSPTA HLSEAPLPSK LSDLARNTDS LSKKHQNSEI KNSDDPPPQQ  420
VTSPHSLQGS SKTSHDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5805621e-58JX580562.1 Gossypium hirsutum clone NBRI_GE13012 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486550.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
TrEMBLA0A0D2NBM80.0A0A0D2NBM8_GOSRA; Uncharacterized protein
STRINGGorai.001G195600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-129C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]