PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G190000.5
Common NameB456_001G190000, LOC105799496
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 367aa    MW: 39246.5 Da    PI: 4.4499
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G190000.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.68.3e-06444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        +C+ ++++    +C+++  +lC +C  + H+       H++
  Gorai.001G190000.5  4 ICDFCGDQLSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                        7*******9*********************65677777766 PP
2zf-B_box20.97.4e-074689441
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                          C++++++++   C + ++ lC++C   +H g       H++++
  Gorai.001G190000.5 46 LLCERCNSQPAFVRCAEERVSLCQNCDWIGH-GastsnstHKRQT 89
                        57*****************************.5578888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.542147IPR000315B-box-type zinc finger
SMARTSM003364.4E-8447IPR000315B-box-type zinc finger
CDDcd000211.95E-6447No hitNo description
PROSITE profilePS501198.8164390IPR000315B-box-type zinc finger
CDDcd000219.31E-54790No hitNo description
SMARTSM003360.684890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGYICDFCGD QLSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPAFVRC  60
AEERVSLCQN CDWIGHGAST SNSTHKRQTI NCYSGCPSSS ELSSMWSFFP QSPPAGESSC  120
EQELGLMCIT ENIERTSWGA IENTINQNSA GVAEVNHDSN TDKGIGWGGT SSIPDLRSMP  180
RVLDQPPGPT GASLPKCPGI CEDALYDDFN MDEVDLNLEN YEELFGVTLN HSEELLGNGG  240
IDSLFGTKDM AAADSNCQGA LAAEGSSVGL INAIQPDCSN AASADSMMSS KTDSILCFTA  300
RQAHSSVSFS GLTGESSAGD YQDCGSSSML LMGEPSWCPP CAESSFQSAT RSNAVMRYKE  360
KKKTRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485544.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_012485552.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_012485560.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
SwissprotQ9SSE51e-122COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0D2PTN40.0A0A0D2PTN4_GOSRA; Uncharacterized protein
TrEMBLA0A0D2Q0X80.0A0A0D2Q0X8_GOSRA; Uncharacterized protein
STRINGGorai.001G190000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-109CONSTANS-like 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]