PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G183400.6
Common NameB456_001G183400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 406aa    MW: 44681.6 Da    PI: 6.1951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G183400.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.2e-16344390455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Gorai.001G183400.6 344 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 390
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-19338397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.15E-16343394No hitNo description
Gene3DG3DSA:4.10.280.103.1E-19344394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-13344390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-17346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MNHCVPDFEM EDDDSIPSTL TRSKKPSMPE DEIMELLWQN GQVVMQSQNQ RSIKKSPPFK  60
FQGADPSATK EIWSSSSHHH HQQQQQQQQQ SLTDHHLFMQ EDEMASWLHY PLSDASFDHD  120
FCADLLYPSS AAPCLTSTTA TTSAPPPLGK VTQVSASAVA SASRPPIPPS RRNELESTRI  180
QNFVHFSRHK AVRVEQFKQS NSKSVVRELT VVDSSDTPAM APESGASQAM PCNTEAASGE  240
NDNINCANMS VAAGANTQSA GVSGSACKDN LAAYEVTVTS SPGGSGASAE PTAQKAAAAE  300
DRKRKGRELE DTEYHSEDVE SESADTKKQT RGSTSTKRSR AAEVHNLSER RRRDRINEKM  360
RALQELIPRC NKSDKASMLD EAIEYLKSLQ LQVQVCLCLY LMRYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348353ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3942601e-104GQ394260.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1225 SSR marker CGR6819 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484421.10.0PREDICTED: transcription factor PIF1-like isoform X1
RefseqXP_012484424.10.0PREDICTED: transcription factor PIF1-like isoform X1
TrEMBLA0A0D2PTE70.0A0A0D2PTE7_GOSRA; Uncharacterized protein
STRINGGorai.001G183400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.34e-58phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]