PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G176600.1
Common NameB456_001G176600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 152aa    MW: 16793.5 Da    PI: 6.8024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G176600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-201769256
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrd  +++    r +lg+f+taeeAa+a+++a+ +++g+
  Gorai.001G176600.1 17 RYRGVRRRP-WGKYAAEIRDsTRQG--GPRLWLGTFDTAEEAARAYDRAAFSMRGH 69
                        69*******.**********44334..4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.2481776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-291777IPR001471AP2/ERF domain
SMARTSM003801.3E-311782IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-211777IPR016177DNA-binding domain
PfamPF008474.1E-151769IPR001471AP2/ERF domain
CDDcd000183.75E-281777No hitNo description
PRINTSPR003671.4E-111829IPR001471AP2/ERF domain
PRINTSPR003671.4E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEQNKMKKAG EAESSLRYRG VRRRPWGKYA AEIRDSTRQG GPRLWLGTFD TAEEAARAYD  60
RAAFSMRGHS AILNFRDEHI ISSTALNSPT TATPSSSSSS SSSSSSSASA ASSSSYFFEH  120
VKSKKDEERI VLELECLDDK LLEELLDFEN K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2917831479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3949341e-127GQ394934.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1957 SSR marker DPL0287 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447971.11e-106PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D2LZY01e-105A0A0D2LZY0_GOSRA; Uncharacterized protein
STRINGGorai.001G176600.11e-106(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2504834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-21ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]