PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G176000.4 | ||||||||
Common Name | B456_001G176000, LOC105797749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 246aa MW: 27594.8 Da PI: 9.6484 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 73.7 | 3.1e-23 | 175 | 236 | 1 | 62 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsC 62 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr +++ ++k+ Gorai.001G176000.4 175 RCQAEGCNADLTQAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRLKSFKLKLKTKKRR 236 6***********************************************98876544444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.6E-25 | 170 | 225 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 20.478 | 173 | 245 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.63E-24 | 174 | 240 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.2E-18 | 176 | 227 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MLEYEWGNPS SIMLSGEETA QEPDPNRQLF HHYATTTTTT TTHHQPYNET LLSHHNPTVF 60 SHQNLFHNPN QAQPPQHPAT LHSLYDPHSY SATSAYSTVH ASLLSLDPVS AVGGSGGGYF 120 LVPKTEEVSR PVDFTARIGL NLGGRTYFSS AEDDFVNRLY RRSRPGDLSS TNSPRCQAEG 180 CNADLTQAKH YHRRHKVCEF HSKASTVIAA GLTQRFCQQC SRLKSFKLKL KTKKRRRKKT 240 FPILQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 2e-18 | 176 | 223 | 6 | 53 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 238 | KSFKLKLKTKKRRRKK |
2 | 229 | 235 | LKTKKRR |
3 | 232 | 237 | KKRRRK |
4 | 232 | 238 | KKRRRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.2272 | 0.0 | flower| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48814094 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during plant development. During pollen development, required for crosporogenesis that leads to archesporial formation and for the histogenesis of the microsporangia. During ovules development, involved in the transition to meiosis of the megaspore mother cells. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:12671094}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apical region and early floral tissues. Transcripts levels increase in developing pollen sacs, and decrease in later stage of anther development. Strongly expressed in the placental region of the carpels. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:17093870}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483143.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 8 isoform X2 | ||||
Swissprot | Q8GXL3 | 1e-62 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A0D2PSZ4 | 0.0 | A0A0D2PSZ4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G176000.1 | 1e-153 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 1e-62 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G176000.4 |
Entrez Gene | 105797749 |
Publications ? help Back to Top | |||
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