PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G176000.4
Common NameB456_001G176000, LOC105797749
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 246aa    MW: 27594.8 Da    PI: 9.6484
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G176000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP73.73.1e-23175236162
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsC 62 
                         +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr  +++   ++k+  
  Gorai.001G176000.4 175 RCQAEGCNADLTQAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRLKSFKLKLKTKKRR 236
                         6***********************************************98876544444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-25170225IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.478173245IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.63E-24174240IPR004333Transcription factor, SBP-box
PfamPF031108.2E-18176227IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLEYEWGNPS SIMLSGEETA QEPDPNRQLF HHYATTTTTT TTHHQPYNET LLSHHNPTVF  60
SHQNLFHNPN QAQPPQHPAT LHSLYDPHSY SATSAYSTVH ASLLSLDPVS AVGGSGGGYF  120
LVPKTEEVSR PVDFTARIGL NLGGRTYFSS AEDDFVNRLY RRSRPGDLSS TNSPRCQAEG  180
CNADLTQAKH YHRRHKVCEF HSKASTVIAA GLTQRFCQQC SRLKSFKLKL KTKKRRRKKT  240
FPILQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-18176223653squamosa promoter-binding protein-like 12
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223238KSFKLKLKTKKRRRKK
2229235LKTKKRR
3232237KKRRRK
4232238KKRRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.22720.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488140940.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during plant development. During pollen development, required for crosporogenesis that leads to archesporial formation and for the histogenesis of the microsporangia. During ovules development, involved in the transition to meiosis of the megaspore mother cells. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:12671094}.
UniprotTISSUE SPECIFICITY: Expressed in shoot apical region and early floral tissues. Transcripts levels increase in developing pollen sacs, and decrease in later stage of anther development. Strongly expressed in the placental region of the carpels. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:17093870}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483143.10.0PREDICTED: squamosa promoter-binding-like protein 8 isoform X2
SwissprotQ8GXL31e-62SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A0D2PSZ40.0A0A0D2PSZ4_GOSRA; Uncharacterized protein
STRINGGorai.001G176000.11e-153(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.21e-62squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]