PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G171000.1
Common NameB456_001G171000, LOC105797313
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 791aa    MW: 85700.4 Da    PI: 6.2764
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G171000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.24.4e-21107162156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Gorai.001G171000.1 107 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 162
                         688999***********************************************999 PP
2START203.39.8e-643025271206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         ela++a++elvk+a+ +ep+W +s     e++n de+ + f++  +     + +ea+r +g+v+ ++  lve+l+d++ +W e+++    +
  Gorai.001G171000.1 302 ELALAAMDELVKMAQTDEPLWIRSLevgrEILNHDEYSRMFTPCIGikpagFLTEASRQTGLVIINSLALVETLMDSN-RWAEMFPcmiaR 391
                         5899*************************************9998899******************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksngh 161
                          +t++vissg      ga+qlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +     +v++++lpSg+++++++ng+
  Gorai.001G171000.1 392 TSTTDVISSGmggtrnGAIQLMHAELQLLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTLRETSGaPTTYVKCRRLPSGCVVQDMPNGY 482
                         ****************************************************************9998899******************** PP

                         EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         skvtwvehv+++++++h l+r+l++sg+ +ga++wva+lqrqce+
  Gorai.001G171000.1 483 SKVTWVEHVEYDESQIHHLYRPLLSSGIGFGAQRWVAALQRQCEC 527
                         *******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-2191164IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-2196164IPR009057Homeodomain-like
PROSITE profilePS5007117.41104164IPR001356Homeobox domain
SMARTSM003899.9E-18105168IPR001356Homeobox domain
CDDcd000861.24E-18106164No hitNo description
PfamPF000461.3E-18107162IPR001356Homeobox domain
PROSITE patternPS000270139162IPR017970Homeobox, conserved site
PROSITE profilePS5084844.623293530IPR002913START domain
SuperFamilySSF559611.58E-34295527No hitNo description
CDDcd088757.33E-126297526No hitNo description
SMARTSM002347.7E-50302527IPR002913START domain
PfamPF018521.5E-55302527IPR002913START domain
SuperFamilySSF559613.22E-24556783No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MNFGGSLNNS SGGGLGGATI VADIPFSNNM AAAGAMAQNI YNSPGLSLAL QQPSIGNQGD  60
GVRMGENFEA SIGRRSREEE HESRSGSDNI DGVSGDDQDA ANNRPRKKRY HRHTPQQIQE  120
LEALFKECPH PDEKQRLELS KRLCLETRQV KFWFQNRRTQ MKTQLERHEN SLLRQENDKL  180
RAENMSIREA MRNPICTNCG GPAIIGDLSL EEQHLRIENA RLKDELDRVC ALASKFLGRP  240
LSSLATSIAS PLPNSNLELG VGSNGFGGLS TTLPLGPDFG GGVSNSLPVV PPNGVERSMF  300
LELALAAMDE LVKMAQTDEP LWIRSLEVGR EILNHDEYSR MFTPCIGIKP AGFLTEASRQ  360
TGLVIINSLA LVETLMDSNR WAEMFPCMIA RTSTTDVISS GMGGTRNGAI QLMHAELQLL  420
SPLVPVREVN FLRFCKQHAE GVWAVVDVSI DTLRETSGAP TTYVKCRRLP SGCVVQDMPN  480
GYSKVTWVEH VEYDESQIHH LYRPLLSSGI GFGAQRWVAA LQRQCECLAI LMSSTVPTGD  540
HTAITASGRR SMLKLAQRMT GNFCAGVCAS TVHKWNKLNA GNVDEDVRVM TRKSVDNPGE  600
PPGIVLSAAT SVWLPVSPQR LFDFLRDERL RSEWDILSNG GPMQEIAHIA KGQDHGNCVS  660
LLRSSAMNAN QSSMLILQET CMDAGGSLVV YAPVDIPAMQ VVMSGGDSAY VALLPSGFAI  720
IPDGPGSPGP TTSNGNGDSH RVGGSLLTVA FQILVNSLPT AKLTVESVET VNNLISCTVQ  780
KIKAALQCES *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482732.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0D2PSP00.0A0A0D2PSP0_GOSRA; Uncharacterized protein
STRINGGorai.001G171000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]