PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G153900.1 | ||||||||
Common Name | B456_001G153900, LOC105795828 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 694aa MW: 76967.7 Da PI: 7.0423 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.9 | 8.3e-23 | 130 | 230 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++ +k+a+e+ +++ + +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + Gorai.001G153900.1 130 FCKILTASDTSTHGGFSVLRKHATEClppldMNQATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--R 218 99****************************9555556679************************************************..3 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++el+v+++r Gorai.001G153900.1 219 GDNGELRVGARR 230 489999**9987 PP | |||||||
2 | Auxin_resp | 101.9 | 8.4e-34 | 256 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++t++ F v+Y+Pr+ s+F++ v+k+++a+k+ +svGmRfkm+fe+ed + rr++Gt+vgv d++p +W++SkWr Lk Gorai.001G153900.1 256 AAHAVTTQTLFVVYYKPRT--SQFIIGVNKYLEAIKNGFSVGMRFKMRFEGEDTPDRRFTGTIVGVGDFSP-HWSESKWRTLK 335 79****************6..9*************************************************.********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-39 | 121 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.76E-40 | 121 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.42E-19 | 129 | 230 | No hit | No description |
PROSITE profile | PS50863 | 11.702 | 130 | 232 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-21 | 130 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-21 | 130 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.0E-31 | 256 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-7 | 560 | 614 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.44E-12 | 574 | 654 | No hit | No description |
PROSITE profile | PS51745 | 27.275 | 578 | 670 | IPR000270 | PB1 domain |
Pfam | PF02309 | 2.5E-6 | 622 | 668 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MANVQVNPRG SSIAHSESGS SDDDLYAELW KLCAGPLVEI PRNHERVFYF PQGHMEQLEA 60 STNQELNNQA PLFNLPSKIL CRVIHVQLLA ELETDDVYAQ ITLQPEADQS EPTSPDPCPA 120 EAPKRTVNSF CKILTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL AAKDLHGYEW 180 RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGARR LARQQTTMPS 240 SVISSQSMHL GVLATAAHAV TTQTLFVVYY KPRTSQFIIG VNKYLEAIKN GFSVGMRFKM 300 RFEGEDTPDR RFTGTIVGVG DFSPHWSESK WRTLKIQWDE PATIQRPERV SPWEIEPFAP 360 SASINLVQPA VKNKRPRPVD IPVSEITTNS AGSTFWGRGS TQSHELTQVG STPEIQSSES 420 QVMWGMRQKE ADYSRGYNSN AWPHSPLVNV SLNLFPNSVS DKNRTEKPQT TLTGYALPSL 480 SRPSKGLMHD QVEKGKKSET STGCRLFGFN LTDTISAVIP TDKEQTNTTV DHNGVWGSLA 540 AASHIDQNPE TAKQKHVAAE ASSKEMQAKQ GASTTSTRSR TKVQMQGIAV GRAVDLTVLK 600 GYDDLINEVE KMFDIKGELR PSGKWSVVFT DDEGDMMLVG DDPWMDFCKM VRKIFIYSSE 660 EVKKISPRCK FAVSSLEGEG TAVTIDSEHK SET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-173 | 19 | 358 | 13 | 355 | Auxin response factor 1 |
4ldw_A | 1e-173 | 19 | 358 | 13 | 355 | Auxin response factor 1 |
4ldw_B | 1e-173 | 19 | 358 | 13 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 373 | 377 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480938.1 | 0.0 | PREDICTED: auxin response factor 18 isoform X1 | ||||
Refseq | XP_012480942.1 | 0.0 | PREDICTED: auxin response factor 18 isoform X1 | ||||
Refseq | XP_012480944.1 | 0.0 | PREDICTED: auxin response factor 18 isoform X1 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | A0A0D2QR00 | 0.0 | A0A0D2QR00_GOSRA; Auxin response factor | ||||
STRING | Gorai.001G153900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G153900.1 |
Entrez Gene | 105795828 |
Publications ? help Back to Top | |||
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