PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G153300.2 | ||||||||
Common Name | B456_001G153300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 271aa MW: 29499.8 Da PI: 9.3445 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.7 | 3.1e-39 | 21 | 80 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn++s Gorai.001G153300.2 21 PPEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNRRS 80 57899****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-26 | 20 | 79 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.4E-33 | 24 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.134 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEEMLPNTCT RGPMLERKTR PPEQLNCPRC NSTNTKFCYY NNYSLTQPRY FCKTCRRYWT 60 EGGSLRNVPV GGGSRKNRRS ILSSSSSPSS SSSSSASAKV PADLKPTSFS HLSSQNPNTH 120 KGQQDLNLGF PPMQPSHGLS QYIQVAKVEN NDHQQKYPSA SALGLLRTGM ASRGLNSFVP 180 APEPDSTTPY STGFSMQDYK PALTFSIDGL ENRAAGIHGI QENGGRVFFP FGEMKPISTN 240 ITNEVDQNKD QGNSAGYWTN GMFGGGGGSW * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ524553 | 0.0 | HQ524553.1 Gossypium herbaceum clone NBRI_L004 simple sequence repeat marker, genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480906.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5 | ||||
Swissprot | Q9ZPY0 | 2e-59 | DOF25_ARATH; Dof zinc finger protein DOF2.5 | ||||
TrEMBL | A0A0D2LT17 | 0.0 | A0A0D2LT17_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G153300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 4e-64 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G153300.2 |
Publications ? help Back to Top | |||
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