PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G153300.1

Common Name

B456_001G153300, LOC105795794

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 286aa MW: 31174.7 Da PI: 9.3329

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G153300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.3e-39	36	95	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn++s Gorai.001G153300.1 36 PPEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNRRS 95 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	35	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.0E-33	39	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MDAAKWSQDF GLVKPMEEML PNTCTRGPML ERKTRPPEQL NCPRCNSTNT KFCYYNNYSL 60 TQPRYFCKTC RRYWTEGGSL RNVPVGGGSR KNRRSILSSS SSPSSSSSSS ASAKVPADLK 120 PTSFSHLSSQ NPNTHKGQQD LNLGFPPMQP SHGLSQYIQV AKVENNDHQQ KYPSASALGL 180 LRTGMASRGL NSFVPAPEPD STTPYSTGFS MQDYKPALTF SIDGLENRAA GIHGIQENGG 240 RVFFPFGEMK PISTNITNEV DQNKDQGNSA GYWTNGMFGG GGGSW*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ524553	0.0	HQ524553.1 Gossypium herbaceum clone NBRI_L004 simple sequence repeat marker, genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480906.1	0.0	PREDICTED: dof zinc finger protein DOF2.5
Swissprot	Q9ZPY0	2e-62	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A0D2N462	0.0	A0A0D2N462_GOSRA; Uncharacterized protein
STRING	Gorai.001G153300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-67	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G153300.1
Entrez Gene	105795794

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]