PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G152200.1 | ||||||||
Common Name | B456_001G152200, LOC105795702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 236aa MW: 26767.7 Da PI: 4.5387 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.2e-18 | 28 | 81 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++f++eq++ Le +Fe++ + ++ e Ak+lgL rqV +WFqN+Ra++k Gorai.001G152200.1 28 NKRRFSDEQIKSLELVFESETRLEPGKKLEVAKELGLHPRQVAIWFQNKRARWK 81 5679*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.3 | 3.6e-37 | 28 | 119 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +krr+s+eq+k+LE Fe+e++Lep +K e+a+eLgl+prqva+WFqn+RAR+k+kqlE+dy+ L+++y+ l+++ e+L+ke++ L +l+ Gorai.001G152200.1 28 NKRRFSDEQIKSLELVFESETRLEPGKKLEVAKELGLHPRQVAIWFQNKRARWKSKQLEQDYSILQANYNILASKLESLKKEKQGLVIQLQ 118 79************************************************************************************99988 PP HD-ZIP_I/II 93 e 93 + Gorai.001G152200.1 119 K 119 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.63E-17 | 13 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.714 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-15 | 25 | 87 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.1E-15 | 28 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.42E-13 | 29 | 84 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-18 | 29 | 90 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-5 | 54 | 63 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 58 | 81 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-5 | 63 | 79 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.5E-12 | 83 | 124 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MMFDGGDNYT QEMMSVTGIS TTKTKNNNKR RFSDEQIKSL ELVFESETRL EPGKKLEVAK 60 ELGLHPRQVA IWFQNKRARW KSKQLEQDYS ILQANYNILA SKLESLKKEK QGLVIQLQKL 120 NHLLKKPEEE GQCCEQVTSM NSIDGESDQG EGVKSDSEGQ LSLSMERSEH ALGGFSDDDS 180 GTKIDCFGLE EKLNFISMAE PADGSLTSSE EWQSFDSDAL FDRYSSGYEW WDFRS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480827.1 | 1e-174 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 6e-64 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A0D2M426 | 1e-172 | A0A0D2M426_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G152200.1 | 1e-173 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2498 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-59 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G152200.1 |
Entrez Gene | 105795702 |
Publications ? help Back to Top | |||
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