PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G150200.2

Common Name

B456_001G150200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 338aa MW: 38734.1 Da PI: 9.5175

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G150200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	103.8	9.2e-33	29	133	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g Gorai.001G150200.2 29 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvG 119 89**************************66677899***********************************************6657 PP S.SEE..EEEEE-S CS B3 87 r.sefelvvkvfrk 99 + + +l++ ++r+ Gorai.001G150200.2 120 EsGKHRLYIDWRRR 133 77888899999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.6E-42	21	140	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.68E-31	26	133	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.13E-27	28	128	No hit	No description
Pfam	PF02362	3.4E-30	29	133	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	15.058	29	134	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-24	29	134	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MMDLSLGSCN NIEESNTGSS RCIEKEYMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSS 60 SNEKGLLLNF EDRNGKSWRF RYSYWNSSQS YVMTKGWSRF VKEKKLDAGD IVSFQRGVGE 120 SGKHRLYIDW RRRPNAPNPT SFAHFQMQNQ FNFPQSVRWG GGIYSLPQSY EPLHRLNYSI 180 YPYNHHHQRQ QHQQLQQQQH QAITYGNVAQ SQYYLRSSSS GSYHHHHHHQ PHQTGAMQEG 240 RVEPMVIESV PVVQGNKTAA KRLRLFGVNM ECPTPTTDES SSSSPHATIV SDHDSPYFPS 300 SSLQSRLPNN NTPFPLSRMQ AEYSKKGKSS LSFDLDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-67	24	136	3	116	B3 domain-containing transcription factor NGA1
5os9_B	4e-67	24	136	3	116	B3 domain-containing transcription factor NGA1
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Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614289	1e-178	JX614289.1 Gossypium hirsutum clone NBRI_GE57566 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017612681.1	0.0	PREDICTED: B3 domain-containing transcription factor NGA1-like
Refseq	XP_017612682.1	0.0	PREDICTED: B3 domain-containing transcription factor NGA1-like
Swissprot	O82799	5e-86	NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBL	A0A0D2LZ04	0.0	A0A0D2LZ04_GOSRA; Uncharacterized protein
STRING	Gorai.001G150200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	7e-80	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G150200.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] Sato H, et al. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]