PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G150000.4 | ||||||||
Common Name | B456_001G150000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 467aa MW: 53408.8 Da PI: 5.3849 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.9 | 9.5e-41 | 6 | 130 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 GfrF P dee+++++Lkkk+ g++ ++ + i+evd++k+ePw+Lp + v+++ ew+fF k +k ++ +++ r+t++gyWk+tg d+ Gorai.001G150000.4 6 EIGFRFLPPDEEIISFFLKKKMMGDHKTT-RYIREVDLLKHEPWQLPaMsVVQSTYPEWFFFYKLSKISQ--RKNDRSTNDGYWKSTGADR 93 68***********************9777.89***************5334555555*******999765..58889************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +++l+g+kktLvfykgr+p+g +tdWvmhe+r+ Gorai.001G150000.4 94 PITC-GDSLIGTKKTLVFYKGRTPNGLRTDWVMHEFRA 130 ****.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-42 | 4 | 135 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.85 | 5 | 146 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-20 | 7 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MDNVLEIGFR FLPPDEEIIS FFLKKKMMGD HKTTRYIREV DLLKHEPWQL PAMSVVQSTY 60 PEWFFFYKLS KISQRKNDRS TNDGYWKSTG ADRPITCGDS LIGTKKTLVF YKGRTPNGLR 120 TDWVMHEFRA TADSLPPNAQ CTRFAASSSQ DNAVGATSME SNSADFDIAL RMYMEEEGMF 180 DSDLSPSGGL HCFPSSSAIF NNDQSRIEEE RFSLEDFDYL QSDDLFDDEN EWQRQFVNTI 240 DDEMEFYGAL FHNPDERTNA EAEYRDNAWH DQIVHMSDGT CHGHSEGLNQ RRMETGVHHD 300 EVLIMDSGVE SATVTAYEIN CLELVQEERS VNSRACKSEY KPISHKSAVL RHPRRVQLQD 360 KSLGKAVSRD KTRESGIRGP AVQPIQDKKS ILQANEGPKM DRDRNTKLIV NWRSEGSSGS 420 SRKNSFNFVE MSQLSCKADP ALVYFRNLVL GLILFVVLVR EVMFLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-28 | 5 | 129 | 15 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847250 | 0.0 | KC847250.1 Gossypium hirsutum NAC domain protein NAC73 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480538.1 | 0.0 | PREDICTED: protein NTM1-like 9 | ||||
TrEMBL | A0A0D2N9W8 | 0.0 | A0A0D2N9W8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G150000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 6e-40 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G150000.4 |
Publications ? help Back to Top | |||
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