PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G148300.3
Common NameB456_001G148300, LOC105795211
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 474aa    MW: 51073 Da    PI: 9.3053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G148300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.7e-16280327355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + hn  ErrRRd+iN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Gorai.001G148300.3 280 EVHNLSERRRRDKINKKMRALKELIPNC-----NKVDKASMLDEAIEYLKTLQ 327
                         57*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-20274334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-20274340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-18275331No hitNo description
PROSITE profilePS5088818.438277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-13280327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MASDLPNVPS MRDPDFMELV WENGQVLIRG LSSKVTQKSS PFSSRSTANG SKDGGVADST  60
FAHPISGLSS LSKLDRQGVD ANIVPVNNFN RLKSSYVPKQ LVEDEVPCSS LQQFKGSKEE  120
KDRVNFSILR SNHASSGAMS TPGLAAGAED LQGNKVRSAP PMSSNIPFGN EGDFMAKRMR  180
PTLPDSEPLK ESFPDEQSEA VPNTRLAPDD TAFKGNPDQM VASSSLCSRG ASNCPTYTFK  240
RRYEDTDLSK NTTMEEAEGT TKAAPVPRGS KGAKRKRKTE VHNLSERRRR DKINKKMRAL  300
KELIPNCNKV DKASMLDEAI EYLKTLQLQV QMMSIGNGVY MPPMMFPLPS AMQHINAQHL  360
GGYSPMALGM GMRMQMGLGC GAPPQFPTSL MTGAPAVPGN PEARFNMLGF PDQMLLRSMS  420
HSPFLSSAAS FTPQSVQPPA AVVSQSAAPP AAQVDLLGGA NPLSTSKDSY PTH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275289KRKTEVHNLSERRRR
2285290ERRRRD
3286291RRRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480192.10.0PREDICTED: transcription factor PIL1
RefseqXP_012480199.10.0PREDICTED: transcription factor PIL1
RefseqXP_012480208.10.0PREDICTED: transcription factor PIL1
TrEMBLA0A0D2LYZ00.0A0A0D2LYZ0_GOSRA; Uncharacterized protein
STRINGGorai.001G148300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-39phytochrome interacting factor 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]