PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G147900.2

Common Name

B456_001G147900, LOC105795181

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 420aa MW: 44969.5 Da PI: 8.2626

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G147900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.4	4.7e-31	167	225	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d++++++tYeg+Hnh+ Gorai.001G147900.2 167 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDKSILITTYEGNHNHP 225 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-33	151	227	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-28	159	227	IPR003657	WRKY domain
PROSITE profile	PS50811	29.964	161	227	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	166	226	IPR003657	WRKY domain
Pfam	PF03106	3.5E-27	168	225	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MELEKLNEEN RRLRSMLDQI TKNYNELQGQ LLMALQKQAH RNQQDQKDAV NGMASTIMSV 60 QQFMDPRPSA ALDVNEPSGS DDKTQELSAS PENTIEIVSK EYDHRMVQNM PGKQVSIEDG 120 TDQTSQSWGS LKSPKIDQSK NEDQVSEGPF RKARVSVRAR SEAPLISDGC QWRKYGQKMA 180 KGNPCPRAYY RCTMAVGCPV RKQVQRCADD KSILITTYEG NHNHPLPPAA TAMANTTSAA 240 AAMLLSGSTK SKDGLPTSAY YPSLPYASSM ATLSASAPFP TITLDLTQGP NAVQLLRPPP 300 SAASFPLPLH GYPQLLGNPM FGPPKLSTAS PAMQLGQRPA SMVETVTAAI ASDPNFTAAL 360 AAAISTIMGP PRNQGNSSNN NDENNNSSNG VGAPALPGSP QIQQSCTTFS SKACTNKPG*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MELEKLNEEN RRLRSMLDQI TKNYNELQGQ LLMALQKQAH RNQQDQKDAV NGMASTIMSV  60
QQFMDPRPSA ALDVNEPSGS DDKTQELSAS PENTIEIVSK EYDHRMVQNM PGKQVSIEDG  120
TDQTSQSWGS LKSPKIDQSK NEDQVSEGPF RKARVSVRAR SEAPLISDGC QWRKYGQKMA  180
KGNPCPRAYY RCTMAVGCPV RKQVQRCADD KSILITTYEG NHNHPLPPAA TAMANTTSAA  240
AAMLLSGSTK SKDGLPTSAY YPSLPYASSM ATLSASAPFP TITLDLTQGP NAVQLLRPPP  300
SAASFPLPLH GYPQLLGNPM FGPPKLSTAS PAMQLGQRPA SMVETVTAAI ASDPNFTAAL  360
AAAISTIMGP PRNQGNSSNN NDENNNSSNG VGAPALPGSP QIQQSCTTFS SKACTNKPG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-22	153	229	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00115	ampDAP	Transfer from AT4G01720	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669821	0.0	KF669821.1 Gossypium hirsutum WRKY transcription factor 6 (WRKY6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480151.1	0.0	PREDICTED: probable WRKY transcription factor 47
Swissprot	Q9XEC3	2e-90	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	A0A0D2PZ69	0.0	A0A0D2PZ69_GOSRA; Uncharacterized protein
STRING	Gorai.001G147900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	2e-64	WRKY family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G147900.2
Entrez Gene	105795181

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]