PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G139700.1

Common Name

B456_001G139700, LOC105794408

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 410aa MW: 46835.6 Da PI: 5.6074

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G139700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.2	4e-22	111	204	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +W+++ v++Li++++ ++++ + + +kk +W+ vsk m ++g+++sp+qC++k+++lnkrykk++++ +++ ++++++++++ Gorai.001G139700.1 111 KWKDNVVRLLIAVVSCVGDEEGVEGlkrksrilQKKEKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCRVVENHSLM 201 7************555544432112334566******************************************669****999 PP trihelix 83 dql 85 d++ Gorai.001G139700.1 202 DSM 204 998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.5E-19	109	231	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MDDSGLECGF LSGPNGGLFD LESPIQREQR PQNHMVMMTD LGNEHRSTGL TEAKGSSQKG 60 FPMNFGKGKG ISPVIAITDG SMSDEDEPSY NEDGNREKCK GKNGWPWKRM KWKDNVVRLL 120 IAVVSCVGDE EGVEGLKRKS RILQKKEKWK TVSKIMISKG CHVSPQQCED KFNDLNKRYK 180 KLNDILGRGT SCRVVENHSL MDSMPHLSQK AKDDVKKILN SKHLFYQEMC AYHNGQSIPN 240 CQDLDLQGCI PSERCLDNNG SDEEEADSED DDDNDVDDDD DDYAVCEEER MGEVKERKKA 300 SAECGGQDGF KFQEGTRSSM VGKDRIKRQM VQLQEERVKL QTEAFELEKQ RFKWVQYCSK 360 KDRELERLRL EKERRRMENE QSILQLRRKV VEVGSLGIDR QSQIDMCSH*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MDDSGLECGF LSGPNGGLFD LESPIQREQR PQNHMVMMTD LGNEHRSTGL TEAKGSSQKG  60
FPMNFGKGKG ISPVIAITDG SMSDEDEPSY NEDGNREKCK GKNGWPWKRM KWKDNVVRLL  120
IAVVSCVGDE EGVEGLKRKS RILQKKEKWK TVSKIMISKG CHVSPQQCED KFNDLNKRYK  180
KLNDILGRGT SCRVVENHSL MDSMPHLSQK AKDDVKKILN SKHLFYQEMC AYHNGQSIPN  240
CQDLDLQGCI PSERCLDNNG SDEEEADSED DDDNDVDDDD DDYAVCEEER MGEVKERKKA  300
SAECGGQDGF KFQEGTRSSM VGKDRIKRQM VQLQEERVKL QTEAFELEKQ RFKWVQYCSK  360
KDRELERLRL EKERRRMENE QSILQLRRKV VEVGSLGIDR QSQIDMCSH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479025.1	0.0	PREDICTED: uncharacterized protein LOC105794408
TrEMBL	A0A0D2LYM0	0.0	A0A0D2LYM0_GOSRA; Uncharacterized protein
STRING	Gorai.001G139700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16739	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	4e-63	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Gorai.001G139700.1
Entrez Gene	105794408

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]