PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G134800.5
Common NameB456_001G134800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 514aa    MW: 57756.8 Da    PI: 8.0486
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G134800.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox535.8e-172479257
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        +kR   t+ q+ +Le++++++r ps e++++LA +lgLt++q++ WF+ rR k+k+
  Gorai.001G134800.5 24 KKRAVKTPAQVIVLENFYKEERFPSDEMKAKLAVQLGLTQKQISSWFCHRRLKDKR 79
                        89****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-18380IPR009057Homeodomain-like
SuperFamilySSF466891.84E-151980IPR009057Homeodomain-like
PROSITE profilePS5007115.7262080IPR001356Homeobox domain
SMARTSM003892.4E-132284IPR001356Homeobox domain
PfamPF000461.5E-142479IPR001356Homeobox domain
CDDcd000864.43E-162480No hitNo description
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSETMGDSGQ VQIEEDKVSL DVNKKRAVKT PAQVIVLENF YKEERFPSDE MKAKLAVQLG  60
LTQKQISSWF CHRRLKDKRR DDYYANGQHD YSSGVIQDHV SGLRQDSCGS IKQGDYRYID  120
LREVESRIIH GQGFPAADLT YEHRSHQYPY GVQMEDPSSE SSLSLHDQLF LKSGNPYDMH  180
ISANPTQNGA IVQTNLSSKS VGYKPSGYLK VKGQSENPVI TAVKRQMGRH YREDGPVLGI  240
QFDPLPPGAF EFPSSHPVNE PINISDSRQP HCLDISGVMK QSKPKIDSYM EGANFNTVHG  300
SKRQDWRCHH QPKYKPSFSC SNPFPDKDFP LDIYKGYADK PAISDCKRSW MSSKLVVERM  360
VPDSCSNHPG PYGRKITNEQ KIPGLHDAHH IHMDPKAKNL PKTSSVVRAC SESLGNERGP  420
FARMEKVENV GGEWKLRKDY PVRVKIDATN ELRVAKRVDL EFPQEDFVAN ASHARLRLLT  480
NPSKGPSMDV PSSFSGDETA ETSLSSRIED AYG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17280RRLKDKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478294.10.0PREDICTED: uncharacterized protein LOC105793916 isoform X3
TrEMBLA0A0D2PQY10.0A0A0D2PQY1_GOSRA; Uncharacterized protein
STRINGGorai.001G134800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.17e-67HB-other family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]