PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G134800.3
Common NameB456_001G134800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 517aa    MW: 58680.5 Da    PI: 9.0194
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G134800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox535.8e-1766121257
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         +kR   t+ q+ +Le++++++r ps e++++LA +lgLt++q++ WF+ rR k+k+
  Gorai.001G134800.3  66 KKRAVKTPAQVIVLENFYKEERFPSDEMKAKLAVQLGLTQKQISSWFCHRRLKDKR 121
                         89****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-1845122IPR009057Homeodomain-like
SuperFamilySSF466891.67E-1560122IPR009057Homeodomain-like
PROSITE profilePS5007115.72662122IPR001356Homeobox domain
SMARTSM003892.4E-1364126IPR001356Homeobox domain
PfamPF000461.5E-1466121IPR001356Homeobox domain
CDDcd000867.33E-1666122No hitNo description
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MLLHLKTQIL LCDNGGFFFK VESKDKTLKK SKGFPDQNIN IYMSETMGDS GQVQIEEDKV  60
SLDVNKKRAV KTPAQVIVLE NFYKEERFPS DEMKAKLAVQ LGLTQKQISS WFCHRRLKDK  120
RRDDYYANGQ HDYSSGVIQD HVSGLRQDSC GSIKQGDYRY IDLREVESRI IHGQGFPAAD  180
LTYEHRSHQY PYGVQMEDPS SESSLSLHDQ LFLKSGNPYD MHISANPTQN GAIVQTNLSS  240
KSVGYKPSGY LKVKGQSENP VITAVKRQMG RHYREDGPVL GIQFDPLPPG AFEFPSSHPV  300
NEPINISDSR QPHCLDISGV MKQSKPKIDS YMEGANFNTV HGSKRQDWRC HHQPKYKPSF  360
SCSNPFPDKD FPLDIYKGYA DKPAISDCKR SWMSSKLVVE RMVPDSCSNH PGPYGRKITN  420
EQKIPGLHDA HHIHMDPKAK NLPKTSSVVR ACSESLGNER GPFARMEKVE NVGGEWKLRK  480
DYPVRVKIDA TNELRVSLSF SWLLLKYAYH MLSFFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRLKDKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5806532e-54JX580653.1 Gossypium hirsutum clone NBRI_GE13119 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478294.10.0PREDICTED: uncharacterized protein LOC105793916 isoform X3
TrEMBLA0A0D2N9650.0A0A0D2N965_GOSRA; Uncharacterized protein
STRINGGorai.001G134800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.15e-63HB-other family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]