PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.001G134800.3 | ||||||||
Common Name | B456_001G134800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 517aa MW: 58680.5 Da PI: 9.0194 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53 | 5.8e-17 | 66 | 121 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le++++++r ps e++++LA +lgLt++q++ WF+ rR k+k+ Gorai.001G134800.3 66 KKRAVKTPAQVIVLENFYKEERFPSDEMKAKLAVQLGLTQKQISSWFCHRRLKDKR 121 89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 45 | 122 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.67E-15 | 60 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.726 | 62 | 122 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-13 | 64 | 126 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-14 | 66 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.33E-16 | 66 | 122 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 97 | 120 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 517 aa Download sequence Send to blast |
MLLHLKTQIL LCDNGGFFFK VESKDKTLKK SKGFPDQNIN IYMSETMGDS GQVQIEEDKV 60 SLDVNKKRAV KTPAQVIVLE NFYKEERFPS DEMKAKLAVQ LGLTQKQISS WFCHRRLKDK 120 RRDDYYANGQ HDYSSGVIQD HVSGLRQDSC GSIKQGDYRY IDLREVESRI IHGQGFPAAD 180 LTYEHRSHQY PYGVQMEDPS SESSLSLHDQ LFLKSGNPYD MHISANPTQN GAIVQTNLSS 240 KSVGYKPSGY LKVKGQSENP VITAVKRQMG RHYREDGPVL GIQFDPLPPG AFEFPSSHPV 300 NEPINISDSR QPHCLDISGV MKQSKPKIDS YMEGANFNTV HGSKRQDWRC HHQPKYKPSF 360 SCSNPFPDKD FPLDIYKGYA DKPAISDCKR SWMSSKLVVE RMVPDSCSNH PGPYGRKITN 420 EQKIPGLHDA HHIHMDPKAK NLPKTSSVVR ACSESLGNER GPFARMEKVE NVGGEWKLRK 480 DYPVRVKIDA TNELRVSLSF SWLLLKYAYH MLSFFL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 114 | 122 | RRLKDKRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX580653 | 2e-54 | JX580653.1 Gossypium hirsutum clone NBRI_GE13119 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478294.1 | 0.0 | PREDICTED: uncharacterized protein LOC105793916 isoform X3 | ||||
TrEMBL | A0A0D2N965 | 0.0 | A0A0D2N965_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G134800.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03250.1 | 5e-63 | HB-other family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.001G134800.3 |
Publications ? help Back to Top | |||
---|---|---|---|
|