PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G134800.1 | ||||||||
Common Name | B456_001G134800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 568aa MW: 64027.1 Da PI: 8.3077 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.8 | 6.6e-17 | 66 | 121 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le++++++r ps e++++LA +lgLt++q++ WF+ rR k+k+ Gorai.001G134800.1 66 KKRAVKTPAQVIVLENFYKEERFPSDEMKAKLAVQLGLTQKQISSWFCHRRLKDKR 121 89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 45 | 122 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.92E-15 | 60 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.726 | 62 | 122 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-13 | 64 | 126 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.8E-14 | 66 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.11E-16 | 66 | 122 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 97 | 120 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MLLHLKTQIL LCDNGGFFFK VESKDKTLKK SKGFPDQNIN IYMSETMGDS GQVQIEEDKV 60 SLDVNKKRAV KTPAQVIVLE NFYKEERFPS DEMKAKLAVQ LGLTQKQISS WFCHRRLKDK 120 RRDDYYANGQ HDYSSGVIQD HVSGLRQDSC GSIKQGDYRY IDLREVESRI IHGQGFPAAD 180 LTYEHRSHQY PYGVQMEDPS SESSLSLHDQ LFLKSGNPYD MHISANPTQN GAIVQTNLSS 240 KSVGYKPSGY LKVKGQSENP VITAVKRQMG RHYREDGPVL GIQFDPLPPG AFEFPSSHPV 300 NEPINISDSR QPHCLDISGV MKQSKPKIIN EVHNTMLSFQ DSYMEGANFN TVHGSKRQDW 360 RCHHQPKYKP SFSCSNPFPD KDFPLDIYKG YADKPAISDC KRSWMSSKLV VERMVPDSCS 420 NHPGPYGRKI TNEQKIPGLH DAHHIHMDPK AKNLPKTSSV VRACSESLGN ERGPFARMEK 480 VENVGGEWKL RKDYPVRVKI DATNELRVAK RVDLEFPQED FVANASHARL RLLTNPSKGP 540 SMDVPSSFSG DETAETSLSS RIEDAYG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 122 | RRLKDKRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX580653 | 2e-54 | JX580653.1 Gossypium hirsutum clone NBRI_GE13119 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478278.1 | 0.0 | PREDICTED: uncharacterized protein LOC105793916 isoform X1 | ||||
TrEMBL | A0A0D2QQ39 | 0.0 | A0A0D2QQ39_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G134800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24782 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 2e-66 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G134800.1 |
Publications ? help Back to Top | |||
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