PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.001G134100.1 | ||||||||
Common Name | B456_001G134100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 345aa MW: 35971.7 Da PI: 8.1319 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 217.8 | 2.4e-67 | 132 | 292 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkls 92 s +++CqdCGnqakkdC+h+RCRtCCksrgfdC thv+stWvpaa+rrerq ++aa+++ a s+ +++ +k++r +++++++ +t++s Gorai.001G134100.1 132 SSGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVRSTWVPAARRRERQLMTAAPTTACAGSSgSTSGAKKPRLV-TSQTTTTLHTSTS 221 56679***********************************************9999998888777466677777765.6667777777777 PP DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++ ++l+tss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+ee Gorai.001G134100.1 222 NTTP-RSLDTSSshqdagfketLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVEE 292 7765.5666666689******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.3E-62 | 134 | 291 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.7E-27 | 136 | 178 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.4E-30 | 243 | 290 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MGMVGLRDFV VVAPASFNHH HHHHHHHAQD PIIGNDQING QNAATALGVG VGVFPLLTAS 60 PCLAPQNMED SDLVNNSGRN KLSGMQLWQN QTSPNYLKKQ SSTLDNNNSS MNLIQTSGGG 120 GMGGGSGGSG TSSGTTCQDC GNQAKKDCSH RRCRTCCKSR GFDCPTHVRS TWVPAARRRE 180 RQLMTAAPTT ACAGSSGSTS GAKKPRLVTS QTTTTLHTST SNTTPRSLDT SSSHQDAGFK 240 ETLPGQVRAP AVFKCVRVTA VEDGEDEYAY QAVVKIGGHV FKGFLYDQGV EERDGFPNIS 300 ELHLGGGSGT NGGSSSSPVL DPSQVYAATG GGLLGGSTYG NPIN* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435560.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 2e-97 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A0D2PYF3 | 0.0 | A0A0D2PYF3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G134100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5883 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12330.2 | 2e-82 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.001G134100.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|