PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G131300.3
Common NameB456_001G131300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 224aa    MW: 25668.3 Da    PI: 10.199
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G131300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC24.36.5e-081301751156
               NF-YC  11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfil 56 
                         e++++ k  ++P+ rik+i+k+++    +s ++  l+ ka elf+ 
  Gorai.001G131300.3 130 EEEEEAKVCRFPMNRIKRIIKTEDSHMAVSQDVVFLVNKAAELFLE 175
                         6677889999***************9*****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.68E-14106202IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.2E-15131199IPR009072Histone-fold
PfamPF008082.1E-13139199IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEFGVEIFRN LRERERESAM ASSSKKPKEE NKKKKNKEKS NRTADKDTKK SIKKPEKKAS  60
ASKTPTKSKP NPESKPDKSK NKSSNGIPVK SQVIADPSSS SESEPQENRN NSHKNVKPNS  120
KRKRKEEVDE EEEEAKVCRF PMNRIKRIIK TEDSHMAVSQ DVVFLVNKAA ELFLEKFCED  180
GYKCSIKDRK KSLSYKHLCT FLFESSLYML FPLPVLSDIT VEY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477933.11e-102PREDICTED: DNA polymerase epsilon subunit C
TrEMBLA0A0D2LY721e-157A0A0D2LY72_GOSRA; Uncharacterized protein
STRINGGorai.001G131300.11e-101(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-20nuclear factor Y, subunit C10
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]