PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G131300.2

Common Name

B456_001G131300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YC

Protein Properties

Length: 235aa MW: 26925.5 Da PI: 10.2981

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G131300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	32.8	1.5e-10	130	217	11	100
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 e++++ k ++P+ rik+i+k+++ +s ++ l+ ka elf+ ++ + + + ++++l ++ v + + +dfl d vp+++ Gorai.001G131300.2 130 EEEEEAKVCRFPMNRIKRIIKTEDSHMAVSQDVVFLVNKAAELFLEKFCEDGYKCSIKDRKKSLSYKHLF--VHEQKRYDFLSDYVPQKK 217 6677889999*************9******************9999999999999999988875..89999********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.19E-13	106	199	IPR009072	Histone-fold
Pfam	PF00808	4.9E-13	139	198	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	8.4E-19	140	215	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MEFGVEIFRN LRERERESAM ASSSKKPKEE NKKKKNKEKS NRTADKDTKK SIKKPEKKAS 60 ASKTPTKSKP NPESKPDKSK NKSSNGIPVK SQVIADPSSS SESEPQENRN NSHKNVKPNS 120 KRKRKEEVDE EEEEAKVCRF PMNRIKRIIK TEDSHMAVSQ DVVFLVNKAA ELFLEKFCED 180 GYKCSIKDRK KSLSYKHLFV HEQKRYDFLS DYVPQKKKAE DALKVMNLAE TGEG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477933.1	1e-128	PREDICTED: DNA polymerase epsilon subunit C
TrEMBL	A0A0D2PY87	1e-166	A0A0D2PY87_GOSRA; Uncharacterized protein
STRING	Gorai.001G131300.1	1e-127	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	6e-28	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Gorai.001G131300.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]