PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.001G131300.1 | ||||||||
Common Name | B456_001G131300, LOC105793589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 244aa MW: 27852.6 Da PI: 10.2978 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 41.1 | 3.9e-13 | 137 | 226 | 11 | 100 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 e++++ k ++P+ rik+i+k+++ +s ++ l+ ka elf+ ++ + + + ++++l ++++v + + +dfl d vp+++ Gorai.001G131300.1 137 EEEEEAKVCRFPMNRIKRIIKTEDSHMAVSQDVVFLVNKAAELFLEKFCEDGYKCSIKDRKKSLSYKHLSTVVHEQKRYDFLSDYVPQKK 226 6677889999***************9*************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.11E-16 | 143 | 224 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.1E-14 | 146 | 209 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.2E-22 | 147 | 224 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MALDIRSMEF GVEIFRNLRE RERESAMASS SKKPKEENKK KKNKEKSNRT ADKDTKKSIK 60 KPEKKASASK TPTKSKPNPE SKPDKSKNKS SNGIPVKSQV IADPSSSSES EPQENRNNSH 120 KNVKPNSKRK RKEEVDEEEE EAKVCRFPMN RIKRIIKTED SHMAVSQDVV FLVNKAAELF 180 LEKFCEDGYK CSIKDRKKSL SYKHLSTVVH EQKRYDFLSD YVPQKKKAED ALKVMNLAET 240 GEG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012477933.1 | 1e-174 | PREDICTED: DNA polymerase epsilon subunit C | ||||
TrEMBL | A0A0D2QPX4 | 1e-173 | A0A0D2QPX4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G131300.1 | 1e-174 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-31 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.001G131300.1 |
Entrez Gene | 105793589 |
Publications ? help Back to Top | |||
---|---|---|---|
|