PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G129700.1

Common Name

B456_001G129700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 282aa MW: 31404.9 Da PI: 8.7764

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G129700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.9	1.5e-42	119	218	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+ Gorai.001G129700.1 119 PCAACKILRRRCAEKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCTGAICQLQKQVNELQ 209 7**************************************************************************************** PP DUF260 92 aelallkee 100 a+la++++e Gorai.001G129700.1 210 AQLAKAQAE 218 **99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.238	118	219	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.5E-43	119	216	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MTSRPRQQVA LTWTRCPVTY PDIALTWTRF CGKWPIPYKK GGTPPHHHHH YHHYHIHSIS 60 LKLRNKESIS VSLVLYPNPP PMLKMEYTSE VAAQSPSPKS SNSSSSPPPP PSTSVVISPC 120 AACKILRRRC AEKCVLAPYF PPTEPTKFTI AHRVFGASNI IKFLQELPES QRADAVSSMV 180 YEASARIRDP VYGCTGAICQ LQKQVNELQA QLAKAQAEVV NMQLQQANLV ALLCMEVAQS 240 PQQNPHQPIN DFLSNSPQSY HSNPSFLDDN NLGSSWEPLW T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-41	111	221	3	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-41	111	221	3	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615895	1e-117	JX615895.1 Gossypium hirsutum clone NBRI_GE60161 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477807.1	1e-144	PREDICTED: LOB domain-containing protein 1
Swissprot	Q9LQR0	6e-73	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A0D2LY54	0.0	A0A0D2LY54_GOSRA; Uncharacterized protein
STRING	Gorai.001G129700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-64	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Gorai.001G129700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]